Protein

View in Explore
Genbank accession
WHL30565.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,62
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MEFIVVQGSKTLNLNNRKPLCSVTKAEHRQSLLSEDVINITVESKTPLALQVGNYIEYENRRYTLNSAPKVKKEQGYYAYDLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRVNVNDNVITRLYVFGSTNNIKSGYRDYSQRLRLPISHGKEYIQDDAKVKLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFAVGDEVTLLDIALPEQYITNSENKLLEEGQKEYEKQSVNNLKYNLELDPLYLQQIGDGTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTDIKDTKTVIKTQEQINRRNYLNGYRNLQELRESVFDVEGYFDSTHIKPESIEANMLSVGAKSQQFALENISLNPNIEGNPARTFISGGKLVHFSLEDDIREWNLLPYSRNDLLNQVYYVYAKCSRGSSNAMWYITTEQIRFDSRSDYYYFLCYLLYTPKDSKREAEAMYGNVFMHGGQITAGRIKSLNGQTYFDLDSGEIAGTIKFKSGNGYAEVGSAIQQAVDAVSVGGRNYLRGSQKGYGMFNNNGRTWDLTQGEENGVKWISGTSVNNGNFYISTYFHLLNNISVFTEDLTGQETIQSMEVKPTHDMYIGFGENNRKFCPANVWTKIENSPYNNTRFMGIYAIWNNDGSVPATAKIYHRNWKLEKGNKATDWTPAPEDIQSDITRAEQQATQASNAYAQAQANLAKTQAEAYADGKVSKEEQRAIADAQQKLQLAKEYAQAQDNLKETLIKAYADGKADKAEQSAIAVAEAKANLARLQAEAHADSIVTAEEQARINEAKAKLEEAKAHAQALVNTHRNEVTSKFNNLGTMAWQNSVERAMLGNTIVQGGYIKTELLNASAIVSNGGGATTSQLNNAINGVIVGGRNLARNTEFKNGGEHWSKGYPQAEFLPNERSVKITSIDGQVYNQIDQNIKCEKNTEYTISAFVKGIGSAFFYALEMKENGTHTTVYSDNYREFPVNSEYKYVNFTIRTQPDTAYFIFILRAFSNNTVWFKDVKLEKGNKATDWTPAPEDLDALFANLQQGIANMQTSLADVKTKTDNFTSIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGANYANKHNAPFRVLDNGKVYGSDMEITGGKIARFNISGNTLSGQGIADPNDYLEIKSSGSILSYKKSLSSGRESYALINNDDSILNGNKNNILRLWGRDVNNYTPYNALSIRADGQYATALNIESGDIRVGGEVGYTGELFLGGVWLTIRKGIITNYS
Physico‐chemical
properties
protein length:1452 AA
molecular weight: 162581,50840 Da
isoelectric point:5,45765
aromaticity:0,10399
hydropathy:-0,50882

Domains

Domains [InterPro]
DC_1026
ATT
1–192
DC_1026 DC_1027 IPR008979
IPR007119
Unmapped
135–262
IPR007119 cd06503 Coil G3DSA:2.60.120.260
Coil
Unmapped
872–899
Coil Coil DC_1746
Coil
Unmapped
950–970
Coil
WHL30565.1
1 1452
Architecture
ATT
STR
ATT 1-192 | STR 277-1314 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WHL30565.1
1 1452
Domain Start End Length (AA) Confidence
N-terminal 1 725 725 0,9504
Central domain 726 1075 351 0,2467
C-terminal 1076 1452 376 0,2235
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-725
Central
726-1075
C-terminal
1076-1452

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Henu10
[NCBI] 		3043665 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella dysenteriae
[NCBI] 		622 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WHL30565.1 [NCBI]
Genbank nucleotide accession
OQ791282.1 [NCBI]
CDS location
range 43114 -> 47472
strand -
CDS
ATGGAGTTTATAGTAGTACAAGGAAGCAAGACCCTTAACCTCAATAATAGAAAGCCTTTATGTTCAGTTACCAAAGCCGAACACAGACAGTCTTTGCTATCAGAAGATGTAATAAACATCACCGTAGAAAGTAAAACTCCTCTTGCTTTGCAAGTGGGCAACTATATAGAATATGAGAACCGAAGATATACACTCAACTCTGCACCAAAGGTAAAAAAGGAGCAAGGGTATTATGCCTATGATTTAGTTTTTGAGGGAGTACAGTATTTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGTTTCCAAAATACGGCGGATTTTCCTTTAACGGGAGAAATAAACATTTTCCTTACGACGCTAATCACAAATATCAATTCCATTTCAGATTTTACTTGGGTTTTGGGTGAATATCCACAAAACACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATATGTCAGGAATACGATACCGAGTTTGAAATCAAGCAAGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAAATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGTAAATGTGAATGATAATGTGATTACCCGTCTTTATGTTTTCGGCTCAACGAATAATATTAAAAGCGGATACCGAGATTATTCACAGCGTTTGCGATTGCCTATTTCTCACGGAAAGGAATATATTCAGGACGATGCTAAGGTAAAATTGTTCGGCTTAAAAGAGGGCGTTAAAAATTTTGACGACATCAAACCTACTTTTAAGGGGATAGTATCAGGCGTTACCAATTTGGAAAACGGCTCGCAAGAGATAGAGGTTTCTAATATGGACTTTGACCTGAACGAAACTGACAGCAACGGAACAAAGTATTTATTAAACGATACTCCCGCGAAGCTCCATATAAACAAAGGAAATTTGGCAGGATATGAATTTGAGTTGCTTAAAAACGGAGGATATAACCACGCTACTAAGACTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCTGTGTTTTCATTTGCGGTTGGCGATGAGGTTACCTTGTTGGATATTGCTCTACCTGAACAGTACATTACTAATTCCGAAAACAAGCTCCTTGAAGAGGGACAAAAGGAATACGAAAAACAATCGGTAAACAACCTTAAATATAATTTAGAGTTAGACCCTCTGTATCTTCAACAGATAGGTGATGGTACATCTATTTTCTTTAAAATTGGGGATTATATCCGTGTGATAGATGAACCGCTTAAAATAGATAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGACACTTACGAAATCAGCTTTGTAGCAAGTCTGCTTACCGATATTAAAGATACTAAAACGGTTATAAAAACGCAGGAACAAATTAACCGACGAAATTACTTGAACGGTTATCGTAACCTGCAAGAGCTTCGAGAAAGTGTCTTTGATGTAGAGGGTTACTTTGACTCTACACATATCAAGCCAGAGAGTATAGAAGCCAATATGCTTTCGGTTGGAGCAAAGAGCCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAATATAGAGGGTAATCCTGCAAGAACATTTATTAGTGGTGGGAAGTTGGTTCATTTTTCTTTAGAAGACGATATTAGAGAGTGGAATTTACTACCATACAGCCGTAATGATTTATTGAATCAGGTTTATTACGTTTATGCGAAATGTTCAAGAGGAAGTAGTAATGCGATGTGGTATATCACCACCGAGCAGATAAGGTTTGATAGTCGGTCAGATTATTATTACTTCTTGTGTTACTTACTCTACACACCAAAAGACAGTAAACGAGAAGCAGAAGCAATGTACGGTAATGTATTTATGCACGGAGGGCAAATAACAGCAGGGAGAATTAAATCGCTCAACGGACAAACCTATTTTGATTTGGATAGTGGGGAAATAGCAGGAACGATTAAGTTCAAAAGCGGTAATGGTTATGCGGAAGTTGGGAGTGCTATACAACAAGCGGTGGATGCGGTAAGTGTAGGAGGTAGAAATTACCTTAGGGGTTCTCAAAAAGGATACGGAATGTTCAACAACAACGGAAGAACATGGGACTTAACACAGGGAGAGGAAAATGGAGTGAAATGGATTTCTGGAACAAGTGTGAATAATGGTAATTTTTATATTTCTACCTATTTTCATTTACTCAATAATATAAGTGTTTTCACGGAAGACCTCACAGGGCAGGAAACTATCCAATCAATGGAAGTAAAGCCCACTCACGATATGTATATAGGTTTTGGGGAGAATAATAGAAAATTTTGTCCTGCGAATGTTTGGACGAAGATAGAAAATTCTCCATATAACAACACTCGTTTTATGGGCATATATGCGATATGGAATAATGACGGAAGTGTTCCTGCAACTGCAAAAATTTACCACAGAAATTGGAAGTTAGAAAAAGGAAATAAAGCTACTGATTGGACACCTGCTCCTGAAGATATACAATCAGATATTACAAGAGCCGAGCAACAGGCAACACAAGCCTCTAATGCTTACGCACAGGCACAGGCTAATTTAGCCAAGACGCAGGCGGAAGCGTACGCTGACGGAAAGGTTAGCAAAGAAGAACAACGAGCGATTGCAGATGCCCAGCAGAAACTGCAATTAGCTAAAGAGTATGCACAGGCACAAGATAACTTAAAGGAAACGCTAATAAAAGCCTACGCAGATGGAAAAGCTGATAAGGCTGAACAATCAGCTATTGCTGTGGCGGAAGCTAAAGCTAATTTGGCGAGGTTGCAAGCAGAGGCTCACGCAGATAGTATAGTGACCGCCGAAGAACAAGCGAGAATAAATGAAGCTAAGGCGAAGTTAGAAGAAGCTAAGGCACACGCTCAAGCGTTGGTAAATACTCATAGAAACGAGGTTACTAGCAAATTTAATAATCTCGGCACAATGGCGTGGCAGAACTCCGTAGAAAGAGCAATGCTCGGCAACACAATTGTGCAGGGAGGCTATATCAAAACAGAGTTACTAAACGCTTCGGCAATAGTGAGTAATGGTGGAGGTGCAACAACATCTCAACTTAATAATGCTATCAATGGAGTAATTGTTGGTGGTCGAAACCTAGCTCGCAATACTGAATTTAAAAACGGTGGAGAGCATTGGAGCAAAGGGTATCCACAAGCAGAGTTTCTACCTAATGAAAGGAGCGTTAAAATAACCTCGATAGATGGACAAGTTTACAATCAAATAGACCAAAATATAAAATGTGAGAAAAACACAGAATATACAATATCAGCCTTTGTTAAGGGGATAGGTTCAGCTTTTTTCTACGCATTAGAAATGAAAGAGAACGGCACTCATACGACTGTTTATTCTGATAATTACAGGGAGTTCCCTGTTAATTCAGAATATAAATATGTGAACTTCACAATAAGGACACAGCCTGACACAGCCTATTTCATCTTTATACTCAGAGCGTTTAGCAACAATACAGTTTGGTTTAAAGATGTAAAACTTGAAAAAGGCAATAAAGCAACCGATTGGACACCCGCCCCCGAAGACTTGGACGCACTATTTGCCAACCTTCAACAAGGAATAGCTAATATGCAAACCTCTTTGGCTGATGTGAAGACCAAGACCGACAACTTCACTTCTATTCAAGGCGGGTTGATGATGGCTAACTTGATGTCAGTCGGAAGCAACCAAGCTAATCAAAACGCTTTTATTAGTGGTATTACCGACGAGGGAGCAATGAGCGTGAGATTTGGAGCAGGAGCGAACTACGCCAATAAACATAATGCACCATTTAGGGTGCTGGATAATGGGAAAGTTTATGGCTCTGATATGGAAATTACAGGTGGTAAAATAGCAAGGTTCAATATTAGCGGAAATACACTTTCGGGGCAAGGAATAGCAGACCCAAACGACTATTTAGAAATAAAGTCATCTGGAAGCATACTTTCATATAAAAAAAGTCTTTCATCTGGGAGAGAAAGCTATGCTCTCATCAATAATGATGATAGTATTTTAAACGGAAATAAAAACAATATACTTCGGCTCTGGGGGCGTGATGTGAACAATTATACGCCCTACAACGCCCTATCTATAAGGGCTGACGGACAGTATGCTACTGCCTTAAATATAGAATCGGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGAGAATTATTTTTGGGGGGAGTATGGCTTACCATTAGAAAAGGTATAATAACAAATTATTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e84c614475342dc1125b0523f757e6594fffc5745a133c6a78fca0cb52604fed
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6712
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50