Protein

View in Explore
Genbank accession
BAD15219.1 [GenBank]
Protein name
10
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPIQQLPMMKGMGKDFKNADYIDYLPINMLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVCGGKLYKGEAVVGDVAGSGRVSMAHGRTSQAVGVNGQLIEYRYDGAVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAEYRAESQPDGIIGIGSWRDFIVCFGSSTIEYFSLTGATTVGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEELATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAVDFMYEGNQITCGDKSEALTGQLQFDISSQYGLQQEHLLFTPLFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVIWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
Physico‐chemical
properties
protein length:472 AA
molecular weight: 52237,40310 Da
isoelectric point:5,90247
aromaticity:0,10593
hydropathy:-0,22860

Domains

Domains [InterPro]
IPR021098
STR
4–472
IPR021098
BAD15219.1
1 472
Architecture
STR
STR 4-472
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BAD15219.1
1 472
Domain Start End Length (AA) Confidence
N-terminal 1 338 338 0,8293
Central domain 339 461 124 0,1673
C-terminal 462 472 10 0,9850
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-338
Central
339-461
C-terminal
462-472

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage ST104
[NCBI] 		221029 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhimurium str. DT104
[NCBI] 		85569 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAD15219.1 [NCBI]
Genbank nucleotide accession
AB102868 [NCBI]
CDS location
range 31816 -> 33234
strand +
CDS
ATGCCGATTCAACAACTCCCCATGATGAAGGGAATGGGTAAAGACTTCAAGAATGCCGACTACATTGATTACCTACCAATCAATATGTTGGCCACACCGAAAGAAGTACTCAACTCATCGGGTTATTTACGCTCATTCCCGGGCATAGCGAAGCGCAACGATGTAAATGGAGTATCGCGCGGAGTTGAGTATAACACCGCTCAGAACGCTGTATATCGTGTTTGTGGCGGCAAGCTCTACAAAGGTGAAGCCGTAGTCGGTGATGTTGCCGGAAGCGGTCGCGTATCAATGGCACATGGTCGCACATCACAGGCGGTAGGCGTTAATGGTCAGCTCATCGAGTATCGCTATGATGGCGCGGTTAAAACCGTCTCAAACTGGCCTGCAGACAGCGGATTCACGCAGTATGAGTTAGGCTCAGTCCGTGACATTACTCGCTTACGTGGGCGTTATGCATGGTCAAAAGACGGTACAGATTCATGGTTTATCACTGACCTTGAAGATGAATCGCATCCTGACCGCTACAGTGCAGAATATCGCGCAGAATCGCAGCCTGACGGGATAATTGGCATAGGTTCATGGCGAGATTTCATCGTCTGCTTTGGCTCGTCGACGATAGAGTATTTCTCCCTGACAGGCGCAACCACCGTTGGCGCTGCGTTGTATGTCGCGCAGCCATCGTTAATGGTACAGAAGGGGATTGCCGGAACATACTGTAAAACGCCATTCGCTGATTCATATGCATTCATCAGTCACCCGGCTACTGGCGCACCTTCCGTCTACATCATCGGGTCAGGGCAGGCTTCACCAATTGCGACGGCCAGTATTGAGAAGATTATCCGCTCATACACAGCTGAAGAACTGGCGACTGGTGTAATGGAGACTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGTCATGTTCTGGTTTACGACGCATCGTCAAGTCAGAACGGACCGCAATGGTGTGTGCTGAAAACAGGGCTTTACGATGATGTATATCGTGCTGTCGACTTCATGTATGAAGGCAACCAGATAACGTGCGGCGATAAATCAGAAGCGTTGACAGGACAATTGCAATTCGACATCAGCAGCCAATACGGACTACAGCAAGAACACCTGTTGTTTACCCCCCTCTTCAAAGCGGACAATGCCAGATGCTTCGACCTCGAAGTTGAATCATCCACTGGTGTTGCTCAATATGCTGACCGCCTGTTTCTGTCTGCAACCACGGACGGAATCAATTACGGTCGCGAACAGATGATTGAACAAAATGAGCCGTTTGTGTACGACAAGCGTGTTATCTGGAAACGTGTTGGGCGCATTCGTCGATTAATCGGATTCAAACTGCGGGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
36b5633394c703e00a7fea767ad8253b91313c707092a752234592cf2e815a30
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8562
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Molecular characterization of a prophage of Salmonella enterica serotype Typhimurium DT104 Tanaka,K., Nishimori,K., Makino,S., Nishimori,T., Kanno,T., Ishihara,R., Sameshima,T., Akiba,M., Nakazawa,M., Yokomizo,Y. and Uchida,I. 2004 15071057 GenBank