Protein

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Genbank accession
YP_009322253.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTSLPIPSEDPRDLKLNAGKFDEVMTSDAHYYVDRFGVKRWTIAGFQYTAEEAIRAYGYITMDSFEDGATLTLPNQVLRYEATGEYYRWDGAFPKAVAAGSTPASTGGVGLGAWISVGDAAFRQEANKKFKYSVKLSDYSTLQEAATAAVDGVLIDRDYKFTDNETVDFGGKVLTIDCKAKFIGDGALIFTNMGSGSIIEKPFMESATTPWVIYPWTEDGKWITDAQAVAATLKQSKTEGYQPGVNDWVKFPGLEALIPQNVKDQHVASTLDIRECVGIEVRSAGGLMAAYLFRNCHHCKVIDSDTIIGGKEGIITFENLSGEWGIGNYAIGGRVHYGSGSGVQFLRNNGGASHNGGVIGVTSWRAGESGFKTWQGSVGAGTARNYNLQFRDSVALSPVWDGFDLGSDPGMAPEDDRPGDLPVSQYPMHQLPNNHMVDNILVMNSLGVGLGMDGRDGYVSNVTVQDCAGAGMLAYTFNRTFSNITVIDCNYMNFDSDQIIIIGDCIVNGIRAAGIKPQPSKGMVISAPNSTLSGVVGNVPSDRILTGNIIDSALGQTRINGFNGDSVVMGLRVHKLTKTLDSGAIRSTLNGGPGSGSAWTEITAISRSLPDAVSLKINRGDYHAVEIPVAVTVLPDAAVRDNGSIALYLVGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:675 AA
molecular weight: 72189,37280 Da
isoelectric point:5,16782
aromaticity:0,08741
hydropathy:-0,12519

Domains

Domains [InterPro]
DC_1559
ATT
1–175
DC_1559
G3DSA:2.10.10.80
ATT
63–119
G3DSA:2.10.10.80 IPR012332
IPR040775
RBD
64–123
IPR040775 IPR011050
IPR011050
STR
126–675
IPR011050
IPR015331
RBD
129–675
IPR015331
YP_009322253.1
1 675
Architecture
ATT
STR
ATT 1-175 | STR 176-675
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009322253.1
1 675
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,9928
Central domain 147 589 444 0,9848
C-terminal 590 675 85 0,8790
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-589
C-terminal
590-675

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 64795_sal3
[NCBI] 		1813769 Uroviricota > Caudoviricetes > Saltrevirus >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009322253.1 [NCBI]
Genbank nucleotide accession
NC_031918.1 [NCBI]
CDS location
range 31140 -> 33167
strand +
CDS
ATGGCTACCACACCGACTAGCTTACCAATCCCGTCAGAAGACCCGCGCGACCTGAAGCTTAACGCTGGTAAATTTGATGAAGTCATGACATCTGATGCACATTACTATGTGGACAGATTTGGCGTAAAACGCTGGACTATTGCTGGATTCCAGTACACTGCGGAAGAGGCCATTCGTGCTTATGGATATATCACAATGGATAGCTTTGAAGATGGCGCGACGTTGACGCTACCAAATCAGGTGCTACGTTACGAGGCAACCGGAGAATATTACCGATGGGATGGTGCATTTCCTAAGGCTGTAGCTGCTGGTTCAACTCCTGCATCAACTGGTGGCGTTGGTTTAGGCGCGTGGATTAGTGTTGGTGACGCAGCATTTAGACAGGAAGCCAACAAAAAATTCAAATATTCAGTAAAATTATCAGATTATTCTACCTTGCAGGAAGCAGCAACAGCAGCAGTTGACGGAGTGTTGATTGACCGCGACTATAAATTCACCGACAACGAGACAGTTGATTTTGGCGGCAAAGTACTAACCATCGACTGTAAAGCGAAGTTTATCGGCGATGGGGCTTTGATTTTCACTAATATGGGTAGTGGTTCTATAATAGAAAAGCCTTTCATGGAGAGCGCTACGACCCCGTGGGTTATTTACCCCTGGACAGAAGATGGGAAGTGGATTACAGATGCACAAGCTGTCGCTGCTACACTTAAACAATCTAAGACTGAGGGGTATCAACCGGGAGTTAATGATTGGGTCAAGTTCCCTGGTCTTGAGGCATTGATACCACAGAATGTAAAAGACCAGCATGTAGCGTCCACGCTGGATATCCGTGAGTGTGTAGGTATTGAGGTCAGAAGTGCTGGTGGACTTATGGCTGCTTACTTGTTCCGCAACTGTCATCATTGTAAGGTGATTGATTCTGACACCATCATTGGTGGTAAAGAAGGCATCATCACCTTTGAAAACTTAAGTGGTGAGTGGGGCATCGGCAACTATGCCATAGGTGGCCGTGTGCATTATGGCTCAGGTAGTGGTGTGCAGTTCCTTCGAAACAACGGAGGTGCGTCGCACAATGGTGGGGTTATTGGTGTGACGTCATGGCGCGCGGGTGAGTCTGGGTTTAAAACATGGCAAGGCTCTGTAGGTGCCGGTACAGCTCGCAACTATAACCTTCAGTTCCGTGACTCAGTTGCATTATCTCCAGTGTGGGACGGCTTTGACTTAGGCTCAGACCCGGGAATGGCGCCGGAAGACGATAGACCGGGAGATCTACCTGTATCTCAATATCCTATGCATCAGCTACCTAATAACCACATGGTTGATAACATCCTTGTTATGAACTCATTAGGTGTAGGTTTAGGCATGGATGGTCGTGATGGTTATGTGTCGAATGTTACCGTGCAGGATTGTGCGGGCGCTGGTATGCTTGCTTACACATTCAACCGTACCTTCTCTAACATTACGGTGATTGACTGCAACTATATGAACTTTGATTCAGACCAGATAATCATCATTGGTGACTGTATTGTAAATGGTATCCGAGCCGCAGGCATTAAGCCTCAGCCATCCAAAGGTATGGTCATCAGCGCACCTAACTCGACCCTAAGTGGTGTTGTAGGTAACGTGCCATCAGACCGTATTCTTACTGGTAACATTATTGATTCTGCGTTAGGGCAGACAAGGATTAATGGGTTTAATGGTGACTCGGTGGTAATGGGTTTAAGAGTCCATAAGCTTACCAAAACCTTGGATAGTGGTGCTATTCGCTCTACGCTGAATGGTGGCCCCGGTTCTGGTTCAGCCTGGACTGAAATTACGGCTATTTCTAGGTCATTACCGGATGCGGTATCACTAAAAATTAACCGCGGCGACTATCACGCGGTAGAAATACCAGTAGCCGTTACCGTGCTACCCGATGCTGCCGTTAGAGATAATGGCAGCATCGCACTATACCTAGTAGGCGATAGTCTTAAAGCATTAGTTAAGCGCGCAGACGGCAGCTATACAAGATTGACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a7476a6bc4e1d52d817d27e91694e6a850e45ad6b795c6153f871e4e9d5e6792
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6847
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequences of three Siphoviridae Bacteriophages infecting Salmonella enterica enterica subsp. Enteridis Paradiso,R., Lombardi,S., Iodice,M.G., Riccardi,M.G., Orsini,M., Bolletti Censi,S., Galiero,G. and Borriello,G. 2016-12-29 — GenBank