Protein

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Genbank accession
AGN12095.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSTIRVNRLIGNSDHNFEIQMPSTANLLVSGSYTADIDSGLVLPVGTTAQRPAIPEAGMIRYNSTLETVEGYNGTDWINLMASVSGASSTSSADIIRKNLVIWLDANNPRSLMPLASDQDANYWYDISGNNFHCAIPTDRYAQESINGQIVKYMDFSVNGSGCAKLVSQGNYTDTPYYPHLTVIFFLKWRTDNSQWRTPLRSRASDHQIIVQSGTRNLGMYDNDATGFNDTGYDIDQFNNWDTKFNMYTWRLSSYESGQYSPNYQCYFNNETTPRATINSSNSRFNRGFHHIGAWGDSSRNPHSSSQNCGSFPVFMVYGRHITTAEQITIYDYYKDTFAI
Physico‐chemical
properties
protein length:340 AA
molecular weight: 38348,81460 Da
isoelectric point:5,56524
aromaticity:0,12647
hydropathy:-0,52029

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12095.1
1 340
Domain Start End Length (AA) Confidence
N-terminal 1 179 179 0,1318
Central domain 180 329 151 0,0516
C-terminal 330 340 10 0,9962
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-179
Central
180-329
C-terminal
330-340

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM3
[NCBI] 		536453 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus pssm3
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12095.1 [NCBI]
Genbank nucleotide accession
HQ337021 [NCBI]
CDS location
range 110193 -> 111215
strand +
CDS
ATGAGCACAATTAGAGTAAACAGATTAATAGGTAATTCGGATCATAACTTTGAGATTCAGATGCCCTCTACTGCCAATTTATTGGTAAGTGGTTCATATACTGCTGACATAGATTCTGGTTTAGTATTACCAGTAGGAACTACAGCACAAAGACCTGCAATTCCAGAAGCAGGTATGATACGATATAATAGTACACTAGAAACTGTAGAAGGATATAATGGTACTGACTGGATTAACTTGATGGCATCTGTATCAGGTGCAAGTTCGACAAGTAGTGCTGATATAATTAGAAAAAACCTAGTAATATGGTTAGATGCAAATAATCCAAGATCATTAATGCCTTTAGCATCAGATCAAGATGCAAACTACTGGTATGATATAAGTGGAAATAACTTCCATTGTGCTATTCCTACCGATAGATATGCTCAAGAGTCTATCAATGGACAGATAGTCAAATATATGGATTTTTCTGTTAATGGTTCAGGTTGTGCTAAATTAGTTTCACAGGGTAATTATACAGATACACCTTACTATCCTCATCTGACTGTTATATTCTTCTTAAAATGGAGAACTGATAATAGTCAATGGAGAACACCATTGAGATCTCGTGCTAGTGACCACCAAATTATTGTACAATCTGGTACAAGAAATCTTGGTATGTATGATAACGATGCTACAGGATTTAATGATACTGGATATGATATTGACCAGTTCAATAACTGGGATACCAAATTTAATATGTACACATGGAGATTATCTTCATATGAGTCTGGACAATACTCTCCTAATTACCAATGTTATTTCAATAATGAGACAACCCCAAGAGCTACTATCAATAGTAGTAATAGTAGATTTAATAGAGGATTCCACCACATAGGTGCATGGGGTGATAGTAGTAGAAATCCTCATAGTTCATCACAGAATTGTGGTTCATTCCCTGTCTTTATGGTCTATGGTAGACATATTACTACAGCAGAACAGATAACAATTTATGATTACTACAAAGATACATTCGCTATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
98307b5960c9d87b85494c508d66b23fbc3e22d32f060e7c32f66fa97d37160d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7555
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank