Protein

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Genbank accession
AAO73169.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGALQINGWSSETQGLQKRPPTTFTKRLQNKGFLGTKPLVHLINRDAQEQYFVGFSGTGLAVWDLKGNNYTVRGYNGYANCANPRTDLRLITVADYTFVVNRNTVCQMGSTLTHAAYPRLDGRAIINVRGGQYGRTLSITINGDGTGSSPQASIKMPNGSAEKVPAGDPYAGMNQVDMTDASWIAAELARQLTVSLGGSGWSFQAGTGWILINAPANDNVRQIATKDGYADTLLSGFIYQVQTFTKLPANAPPGYLVEITGESARSGDNYWVQYDASGKVWKETAKPKIIAGFNNATLPHALVRAADGQFDWTPLTWDGRNAGDDDTNPMPSFVGATINDVFFFRNRLGFLSGENVVMSRTSKYFNFFPSSVATLSDDDPIDVAISHNRISILKYAVPFSEQLLLWSDQAQFVLSSKTILSSKTIELDLTTEFDVSDGARPYGIGRGVYFAAPRASFTSLKRYYAIQDVSDVKSAEDVSAHVPSYITNTVHAIHGSGTENFVSILSDGSPNKVFIYKFLYLDEILQQQSFSHWEFGDAATTRVLAASCIGSYCYLMIDRPEGLCLERMEFTQHTIDYSIEPYRTYMDMKKTIVLGAYNIDTNLTSFDVRTAYGGTPGPESTFYTIDQQGVLIEHEARDWATNPYISFVGNRAGEQMVIGKQYTFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYEESGAFEINVNNGSSEFVYVMTGGRLGIQRVLGELSVGTGQFKFPVTGNAVNQRVTITSSNPNPLNVIGCGWEGNYIRRSSGI
Physico‐chemical
properties
protein length:808 AA
molecular weight: 88925,56770 Da
isoelectric point:5,80857
aromaticity:0,11139
hydropathy:-0,26522

Domains

Domains [InterPro]
IPR058003
TTP
1–808
IPR058003
AAO73169.1
1 808
Architecture
TTP
TTP 1-808
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAO73169.1
1 808
Domain Start End Length (AA) Confidence
N-terminal 1 142 142 0,9911
Central domain 143 341 200 0,2939
C-terminal 342 808 466 0,2008
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-142
Central
143-341
C-terminal
342-808

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage gh-1
[NCBI] 		197783 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ghunavirus
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAO73169.1 [NCBI]
Genbank nucleotide accession
AF493143 [NCBI]
CDS location
range 21698 -> 24124
strand +
CDS
ATGGGACTCGTTTCGCAATCCGTCAAGAACCTCAAGGGAGGTATCTCGCAACAACCAGACATCCTTCGGTTCTCCAACCAAGGCGCTCTGCAAATCAACGGGTGGTCCTCGGAGACTCAGGGTCTTCAGAAGCGTCCACCGACCACCTTCACCAAGCGACTCCAGAACAAGGGTTTCCTCGGCACCAAGCCGCTGGTTCACCTCATCAACCGGGACGCCCAAGAGCAATACTTCGTGGGCTTCTCTGGGACTGGTCTGGCAGTCTGGGACCTGAAGGGCAACAACTACACCGTGCGTGGCTACAACGGTTACGCCAACTGCGCCAACCCTCGCACCGACCTGCGCCTCATCACTGTGGCCGACTACACCTTCGTGGTAAACCGGAACACCGTGTGCCAGATGGGATCAACCCTGACCCATGCGGCCTACCCACGGCTGGATGGTCGAGCGATTATCAACGTGCGTGGCGGTCAGTACGGTCGAACCCTGTCGATCACAATCAACGGTGACGGCACTGGGTCCAGTCCTCAAGCGTCCATTAAGATGCCCAACGGGTCTGCCGAGAAGGTGCCCGCTGGTGACCCATACGCTGGCATGAACCAAGTGGACATGACAGATGCCTCATGGATTGCCGCTGAGCTGGCCCGTCAACTGACAGTCTCTCTGGGAGGCTCTGGGTGGTCGTTCCAAGCAGGCACCGGGTGGATTCTCATCAATGCCCCTGCCAACGACAACGTGCGCCAGATCGCCACCAAGGACGGTTACGCTGACACCCTGCTCAGTGGGTTCATCTATCAGGTCCAGACCTTCACGAAGCTCCCTGCGAACGCCCCACCGGGTTACCTCGTGGAGATCACTGGTGAGTCTGCCCGTTCGGGTGACAACTACTGGGTCCAATACGACGCCTCTGGGAAGGTCTGGAAGGAGACAGCGAAGCCCAAGATCATCGCAGGGTTCAACAACGCAACGCTCCCACACGCGCTTGTGAGGGCCGCTGACGGGCAGTTCGACTGGACTCCCCTGACGTGGGATGGACGCAACGCTGGTGACGATGACACGAACCCAATGCCGTCCTTCGTGGGCGCTACGATCAACGACGTGTTCTTCTTCAGGAACCGTTTGGGTTTCCTCTCGGGTGAGAACGTCGTGATGTCTCGGACCTCGAAGTATTTCAACTTCTTCCCGAGCAGTGTGGCGACCCTGAGTGATGACGACCCAATCGACGTGGCCATCTCGCACAACCGTATCTCGATCCTGAAATACGCTGTGCCGTTCTCTGAGCAGCTCCTGCTGTGGTCCGACCAAGCTCAGTTCGTTCTGTCGAGCAAGACCATCCTGTCGAGCAAGACCATCGAGCTTGACCTGACCACTGAGTTCGACGTGAGTGATGGTGCCCGTCCCTATGGGATTGGTCGCGGGGTTTACTTCGCAGCTCCACGGGCCTCCTTCACGTCCCTCAAACGGTACTACGCGATTCAGGATGTCTCTGACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACATCACGAACACCGTCCACGCTATCCACGGGTCTGGTACTGAGAACTTTGTGAGCATCCTTTCGGACGGCTCGCCAAACAAGGTCTTCATCTACAAGTTCCTGTACCTCGACGAGATTCTCCAGCAGCAGTCCTTCAGTCACTGGGAGTTCGGCGATGCGGCTACCACCCGTGTCCTCGCAGCCTCGTGCATTGGCTCCTACTGCTACCTGATGATCGACCGTCCAGAGGGACTGTGCCTTGAGCGCATGGAGTTCACGCAACACACCATCGACTATTCCATCGAGCCTTACCGGACCTACATGGACATGAAGAAGACCATCGTCCTCGGTGCTTACAACATCGACACGAACCTGACTTCGTTCGACGTTCGGACTGCATACGGTGGAACGCCGGGGCCTGAGTCCACGTTCTACACCATCGACCAACAAGGGGTTCTCATCGAACACGAGGCGCGGGACTGGGCGACCAATCCGTACATCTCGTTCGTGGGCAACCGAGCTGGTGAGCAGATGGTGATCGGCAAGCAGTACACGTTCCAGTACGAGTTCAGCAAGTTCCTCATCAAGCAGACCGCTGACGATGGGTCCACCTCGACCGAGGACATCGGACGCTTGCAGCTCCGTCGTGCGTGGCTGAACTACGAGGAATCTGGTGCCTTCGAGATCAACGTCAACAACGGCTCCAGTGAGTTCGTCTACGTGATGACTGGTGGTCGCCTCGGGATTCAACGAGTCCTCGGTGAGTTGTCCGTGGGTACTGGTCAGTTCAAGTTCCCTGTGACCGGCAATGCCGTCAACCAACGAGTCACCATCACCAGCTCCAACCCGAACCCACTCAACGTGATCGGATGCGGCTGGGAAGGTAACTACATCCGCCGTTCTTCCGGCATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9d3461971fcf30f1ce1b83635b8c97aabf2d16fa6550a8d1540c35f4119ecebb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8954
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genomic sequence of lytic bacteriophage gh-1 infecting Pseudomonas putida--evidence for close relationship to the T7 group Kovalyova,I.V. and Kropinski,A.M. 2003 12842620 GenBank