Protein

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UniProt accession
A0A8S5MCM8 [UniProt]
Protein name
Pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSVQANNIYVGARYIPRIMGEYNNETAYEALDIVTSGGVGYISRQPVPAGTAVTNKEYWAMWGSGNAAIDALTQRVATNETDITALETGLQQTNQKLQNLVIPWEPASTLKGDGSTDNTTAFGQLDANTPVSLMPGNYLISGNVTIPCAVQFLPGAKLVYNAATPGTNYCTVTFSKGFVEYGTQIFDTYIIPRVGSQNATPEINPAWYGVSENQTATNNDLALTWILSSTMGAKRINFAPGTYTFSNISQGTYFNSQEGAEILGNGAVFNGAITVPNITFNGVTFTGDISANRGNFKGCTFDGGSSISSTYGYLKVIGCKFNWTEDLIVSTMGTNGYTLIEKCTINRNATNLDTPFSLSDSNTNIIRDCVFNDLMSESSMPHFSIQLDTTSNSRVTGCYMPTGKIVCAYAENNLCYMLTADNAFSNMVGGSYQSENKTITGYALSGSNTTLSKGSSTPMQLELIKLYSDGTYENVGAPTEANVRVIGNNSEQTIYNGSGTLRIGSDETAKAIMLTYSGSDSNNMIASMVITIT
Physico‐chemical
properties
protein length:533 AA
molecular weight: 57089,99860 Da
isoelectric point:4,57835
aromaticity:0,09381
hydropathy:-0,15854

Domains

Domains [InterPro]
DC_1976
STR
18–533
DC_1976
IPR011050
STR
205–457
IPR011050
A0A8S5MCM8
1 533
Architecture
STR
STR 18-533
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A8S5MCM8
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 119 119 0,9856
Central domain 120 449 331 0,9738
C-terminal 450 533 83 0,8538
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-119
Central
120-449
C-terminal
450-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Podoviridae sp. cty0j11
[NCBI] 		2826592 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD80002.1 [NCBI]
Genbank nucleotide accession
BK014877 [NCBI]
CDS location
range 1358 -> 2959
strand -
CDS
ATGTCAGTGCAAGCTAATAACATCTATGTGGGCGCTCGTTATATCCCCCGGATTATGGGAGAATATAATAATGAAACTGCCTATGAAGCCCTAGACATTGTTACAAGCGGCGGTGTGGGGTATATCAGCCGTCAACCTGTCCCCGCCGGTACTGCTGTAACAAATAAAGAATACTGGGCAATGTGGGGAAGTGGAAACGCCGCTATTGATGCCCTGACCCAGAGAGTGGCAACAAATGAAACCGATATCACAGCACTTGAAACCGGTTTACAGCAAACTAACCAAAAGTTGCAAAATTTGGTTATTCCTTGGGAGCCTGCAAGCACCCTTAAAGGGGATGGGAGTACAGACAATACAACGGCGTTTGGACAGCTTGACGCAAATACCCCCGTTTCCCTCATGCCTGGTAACTACCTCATTAGCGGAAATGTAACCATTCCTTGCGCTGTACAATTTCTGCCCGGTGCCAAACTTGTGTACAACGCCGCAACACCCGGCACTAACTATTGTACGGTGACTTTCTCTAAAGGTTTTGTTGAATATGGTACTCAAATTTTCGATACCTATATTATTCCCCGTGTTGGTAGTCAAAACGCAACACCGGAAATCAACCCCGCATGGTATGGCGTATCAGAAAACCAGACTGCAACAAACAACGACCTTGCATTAACCTGGATTCTTTCTAGCACAATGGGGGCTAAAAGAATTAACTTTGCGCCGGGTACTTATACCTTTAGCAATATTAGCCAGGGAACCTATTTTAACTCCCAGGAGGGCGCAGAAATTCTAGGTAATGGCGCTGTATTTAACGGTGCTATTACTGTACCCAATATTACCTTTAATGGTGTGACCTTTACAGGGGATATCAGCGCTAATAGAGGTAATTTTAAGGGTTGCACTTTTGATGGTGGTTCTAGTATTTCCTCTACCTACGGATACCTCAAAGTAATTGGTTGTAAATTTAACTGGACGGAGGACTTGATTGTATCCACAATGGGTACTAATGGTTATACGCTGATTGAAAAATGCACAATCAACCGCAATGCCACAAATTTGGATACCCCGTTTTCCCTGAGTGATAGCAATACCAATATTATTAGAGATTGCGTTTTCAATGATTTAATGAGCGAAAGCTCTATGCCCCATTTTTCTATTCAGTTAGACACAACTTCAAATAGCCGTGTTACAGGGTGCTATATGCCTACAGGCAAAATTGTTTGTGCTTACGCAGAAAATAACCTTTGCTATATGCTTACGGCAGATAATGCTTTCTCGAACATGGTAGGCGGCTCTTATCAATCTGAAAATAAAACAATTACAGGCTATGCATTAAGCGGTAGTAATACAACTCTTTCAAAGGGAAGTAGTACACCTATGCAACTTGAACTTATAAAACTTTACAGCGATGGCACATATGAAAACGTTGGAGCGCCTACAGAAGCAAACGTAAGAGTTATTGGGAATAACTCGGAACAGACAATTTATAATGGAAGTGGCACACTTAGAATCGGAAGTGATGAAACAGCAAAAGCAATTATGCTCACTTATAGCGGAAGCGATTCAAATAACATGATTGCAAGTATGGTAATTACAATTACCTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
38f06cb104f7fdba67d8e3af5131da24605a4746e127e4528846dd14e2d01bb7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8133
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50