Protein

View in Explore
Genbank accession
YP_009823360.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,64
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MELTVAGGYFIPGKTPQIINKVNELIALGYVPYGTPTYNEASGWVSQLMVLGYGGSATDYTLTTGYLDKTPYFPKKPPVNGNWVLLGSLLARSNNFYVHAWLDGVAAGPLINIDTGTTGTLPISRGGTGATTELDARNNLELGAEDDVTFNSVTSRKRNTGTSAFIAQGVDGYTPASSFTTQMYDTAGTTLLGQGEFRANNNGTLQIINRDPVGSTSYFWTFGRDGTTEFPGQTIIPATPGKPCILRSGAPVLQFEETDTGKVYTMVADGSGLRINANNTSGPIVWGYSGTTSRLQLPGIEGNIQMYSGTTTSLGVITTGGGTTAVGTRNQFEVTTSAGFYLVRRNTQNTTGQYIINFPTSAGTLALAGTSGINFKHDITDADLLEAVNRIDALRMVNFVYNDDEQNRQRFGIIAEEAETIAPQYIKHREEMYECDIDENGSSINQKFRDRPFVDVNPIVMDLLGYVKHLSARVAELEEKLK
Physico‐chemical
properties
protein length:482 AA
molecular weight: 52097,55810 Da
isoelectric point:4,95843
aromaticity:0,09336
hydropathy:-0,26349

Domains

Domains [InterPro]
DC_1877
STR
8–482
DC_1877
IPR030392
CHP
371–481
IPR030392
IPR030392
CHP
373–425
IPR030392
YP_009823360.1
1 482
Architecture
STR
STR 8-482
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009823360.1
1 482
Domain Start End Length (AA) Confidence
N-terminal 1 60 60 0,8931
Central domain 61 259 200 0,2268
C-terminal 260 482 222 0,9527
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-60
Central
61-259
C-terminal
260-482

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PTXU04
[NCBI] 		2508206 Uroviricota > Caudoviricetes > Xuquatrovirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009823360.1 [NCBI]
Genbank nucleotide accession
NC_048193 [NCBI]
CDS location
range 3561 -> 5009
strand +
CDS
ATGGAATTAACAGTTGCGGGTGGCTACTTCATTCCCGGCAAGACGCCGCAAATTATCAATAAGGTTAATGAGTTAATCGCTCTCGGCTACGTTCCCTACGGTACCCCGACGTATAACGAGGCCAGCGGTTGGGTAAGTCAGCTAATGGTGCTGGGCTACGGCGGCAGCGCTACTGACTACACTCTCACGACTGGTTATCTCGATAAGACTCCCTACTTCCCTAAGAAGCCGCCAGTTAACGGTAATTGGGTGTTGCTCGGCTCACTACTGGCGCGCTCCAATAATTTCTACGTGCACGCATGGCTTGACGGCGTAGCCGCTGGCCCACTCATCAATATCGACACGGGCACCACTGGCACGCTACCAATCAGCCGGGGCGGTACCGGGGCAACTACGGAACTGGACGCACGCAACAATCTGGAGTTAGGCGCAGAGGATGACGTGACGTTTAACAGCGTTACCAGTCGCAAGCGCAACACCGGAACGTCAGCGTTCATCGCTCAGGGCGTTGATGGCTACACTCCAGCATCCAGCTTTACAACGCAGATGTACGACACCGCAGGTACCACGTTGCTCGGTCAGGGCGAGTTCCGCGCCAACAATAACGGTACGCTGCAAATCATCAACCGCGATCCTGTAGGTTCAACGTCATACTTCTGGACCTTCGGACGCGACGGGACTACTGAGTTTCCGGGACAAACAATTATTCCCGCAACTCCGGGTAAACCTTGCATCCTCAGGTCGGGTGCTCCGGTTCTCCAGTTTGAGGAAACCGATACTGGCAAGGTTTACACGATGGTTGCCGATGGTAGCGGTCTGCGTATCAATGCTAACAACACAAGCGGTCCGATCGTATGGGGTTATAGCGGAACAACATCTCGTCTACAATTACCTGGTATCGAGGGTAACATTCAGATGTATAGCGGCACCACAACCAGCCTCGGTGTAATCACTACTGGCGGCGGTACCACAGCGGTGGGTACTCGCAACCAGTTTGAGGTGACCACTTCGGCGGGGTTCTATCTGGTGCGACGTAACACTCAGAACACCACCGGACAATATATTATCAACTTCCCTACGAGTGCAGGAACCCTGGCCCTCGCAGGTACGTCAGGTATCAATTTCAAACATGACATTACTGACGCCGATTTACTGGAAGCTGTGAACCGCATCGACGCGCTACGCATGGTCAACTTTGTCTACAACGACGACGAGCAAAACCGCCAGCGCTTCGGGATTATCGCGGAAGAGGCGGAAACTATAGCTCCGCAGTACATTAAACATCGTGAAGAAATGTATGAATGCGACATTGACGAGAACGGATCATCCATCAACCAGAAGTTCCGCGACCGTCCGTTTGTTGACGTTAACCCCATCGTCATGGATTTACTGGGCTACGTTAAGCACTTGTCGGCACGCGTGGCTGAACTGGAAGAGAAATTAAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b803eac3277a675f74feb02bdd68c8a22cda2c3c1c247d963f7dd6f4fbd6125d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6525
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J. 2019-05-17 — GenBank