Protein

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Genbank accession
YP_009813540.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MPLVKVDVGMITATGASDNTPIRANAGVLTASADESGVPSEITDESSYDETSGILTLRFENGKSIQIKGFPTASSIPPGRQGARGETGADGKDGRDGRDGAQGGIGCTGPVGPDGDEGPPGKDGRDGNPGIPGEIGPTGATGPTGNVGPTGPMGRPGPTGATGKTGPTGPTGPEGPSGKLQIVVSSTQPGNMAAGVLWVNPSIDQAATWP
Physico‐chemical
properties
protein length:210 AA
molecular weight: 20508,24300 Da
isoelectric point:4,50048
aromaticity:0,02381
hydropathy:-0,51619

Domains

Domains [InterPro]
DC_1829
ATT
1–76
DC_1829 IPR008160
PTHR24637
Unmapped
58–179
PTHR24637
DC_0841
STR
64–196
DC_0841
YP_009813540.1
1 210
Architecture
ATT
STR
ATT 1-76 | STR 77-196 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA11
[NCBI] 		2382310 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009813540.1 [NCBI]
Genbank nucleotide accession
NC_048077.1 [NCBI]
CDS location
range 64152 -> 64784
strand -
CDS
ATGCCTTTAGTAAAAGTTGATGTAGGCATGATCACAGCAACGGGGGCTTCCGACAATACGCCTATCCGCGCCAATGCTGGCGTGCTTACTGCATCGGCTGATGAATCTGGTGTACCTTCTGAAATCACTGACGAATCCAGTTACGATGAAACTTCCGGAATTTTAACTTTGCGTTTTGAAAACGGAAAATCAATTCAAATAAAAGGTTTTCCAACTGCATCAAGTATTCCTCCGGGAAGACAAGGTGCGCGTGGTGAAACTGGCGCAGATGGAAAAGACGGAAGAGACGGAAGAGACGGCGCTCAAGGTGGAATCGGTTGTACCGGGCCAGTAGGGCCAGACGGCGATGAAGGCCCACCGGGAAAAGATGGTCGCGACGGTAATCCGGGAATTCCGGGAGAAATCGGTCCAACTGGTGCAACTGGTCCAACTGGAAATGTCGGACCGACTGGCCCGATGGGTCGCCCCGGTCCAACTGGTGCAACTGGAAAAACTGGACCAACTGGACCAACTGGACCAGAAGGCCCAAGTGGAAAATTGCAAATCGTTGTGAGTTCTACTCAACCGGGAAATATGGCGGCTGGTGTGTTGTGGGTGAATCCTTCTATTGATCAAGCTGCAACGTGGCCGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1db75741d4c862073588c94b51a6c5768a77b2e82bf5b99a0fa37c53bda133f7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7083
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo bacteriophages are represented within an increasing diversity of environmental viruses infecting the emerging phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank