Protein

View in Explore
Genbank accession
AUR92535.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDLDNAINSINASAAKAENTATFLDDMSTFDDQSSVTNPNNGQTVASIPKQVKDRTDELFTAAESDINQAVSDAEQSATDAQDAADSIGRYQGLWPDSGGSADKGDTYQTQVSGTPTGQYFTALQNTTVDPVGDDANWREVARNQKIQTAGGDSLDIIVQAPESTGLPCLVRMTSNSSNGMTFNGKPLKVLDIYATEESQWTHSGYDSAAKDKPKTDVYRSVYQNVLSADVTYVFVYHESGDFWEVLVDKIYKHAFIPCGSGKEITELQDAFGFVAQFSLSKAMDPLFQNVNANTEFYPNKPQISISIPAGTSEAPVISVMNKAVRAGEHNLNGVEVINEGRYDNNTDPETAIIDMSGVPLGADDLACFNLWKSDLGEVHGVTFRYWGDFDFSNQGVIRYQRSEARFKACIIDVENCTFTGLPGGVSALYHDRFIEGFGITIKCPTGTNRLIALNTQRSPIGSVTVTGNPYIFARVGGDVTFENVDIQGNPTFLLTNREPASVSFIGTSTIGAGTLRETSAQIPQLSLYISTGTTVNNLTVIPDKHYVYDNAYEHLTEALRIAHKTGLGTVEFLNQSGSAAAKVGKIQSQASGLDMSGDGATGHWSIDGGGTLYPITDNSYRIGFAGKRVTDLYIVNNPTVGSDVRIKTDRSSIPQALCDFVMGVEIEQYKLIGGDSGRYHYGIVITEDFLDRLNLVYSVDECAALCHSVFTDDKGDPINMTVGTVELGDLWQVRYAEWQNIMLEAMRRKIMSI
Physico‐chemical
properties
protein length:755 AA
molecular weight: 82087,19660 Da
isoelectric point:4,60671
aromaticity:0,08874
hydropathy:-0,27868

Domains

Domains [InterPro]
Coil
Unmapped
1–21
Coil IPR036388
DC_0090
STR
1–745
DC_0090
IPR030392
CHP
644–755
IPR030392
AUR92535.1
1 755
Architecture
STR
RBD
STR 1-745 | RBD 746-755
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR92535.1
1 755
Domain Start End Length (AA) Confidence
N-terminal 1 178 178 0,9693
Central domain 179 521 344 0,8859
C-terminal 522 755 233 0,9154
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-178
Central
179-521
C-terminal
522-755

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.173.O._10N.261.55.A11
[NCBI] 		1881252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR92535.1 [NCBI]
Genbank nucleotide accession
MG592540.1 [NCBI]
CDS location
range 31280 -> 33547
strand +
CDS
ATGAGCGATTTAGACAACGCTATAAATTCAATTAACGCATCAGCAGCTAAGGCAGAAAATACCGCTACCTTTCTGGATGATATGTCGACGTTTGACGATCAATCAAGCGTAACCAACCCAAACAACGGCCAAACTGTTGCGTCTATTCCTAAACAGGTAAAAGATCGCACGGACGAGCTGTTTACCGCTGCTGAGTCGGATATAAATCAAGCAGTATCTGACGCCGAACAAAGCGCAACAGACGCACAAGATGCTGCGGATAGTATTGGGCGCTATCAAGGATTATGGCCTGATTCTGGCGGCAGTGCTGACAAGGGCGACACATATCAAACTCAAGTAAGCGGCACACCTACAGGTCAGTACTTTACAGCGCTACAAAACACAACAGTTGATCCGGTTGGTGATGATGCGAACTGGCGTGAGGTTGCGCGTAATCAAAAAATTCAAACAGCAGGTGGTGATAGCTTAGATATAATTGTACAAGCACCAGAGTCTACCGGCCTTCCCTGCTTGGTGCGAATGACAAGTAACTCCAGCAATGGAATGACTTTCAACGGTAAGCCTTTAAAGGTGTTGGATATTTACGCAACAGAGGAAAGCCAATGGACGCATTCTGGCTATGACTCAGCAGCAAAAGATAAACCAAAAACTGACGTATACCGAAGCGTATATCAAAACGTACTCTCGGCAGATGTGACTTACGTATTTGTGTATCACGAAAGTGGAGATTTTTGGGAGGTTCTTGTAGATAAGATCTACAAACACGCGTTCATTCCTTGCGGGAGCGGTAAGGAGATAACCGAACTACAAGACGCTTTTGGTTTTGTAGCGCAATTTAGCCTATCAAAAGCAATGGACCCTCTATTCCAAAACGTAAACGCTAACACGGAGTTTTACCCAAACAAGCCACAAATAAGTATATCAATTCCAGCAGGAACGTCTGAAGCTCCAGTTATCTCTGTAATGAATAAAGCAGTGCGAGCGGGTGAGCATAATCTTAATGGAGTAGAGGTTATTAACGAGGGACGTTACGACAATAATACCGACCCAGAGACGGCTATTATTGATATGTCAGGCGTGCCCCTTGGTGCTGATGATTTGGCTTGTTTTAACTTGTGGAAATCAGATCTTGGTGAAGTTCACGGGGTTACGTTTAGATACTGGGGAGATTTTGACTTTAGCAACCAAGGGGTTATAAGGTATCAACGATCTGAAGCTAGATTCAAGGCGTGCATCATAGATGTTGAAAATTGTACGTTTACTGGACTTCCTGGTGGAGTATCTGCGCTTTACCACGATAGGTTTATCGAAGGTTTTGGAATTACAATCAAATGCCCTACTGGAACTAATAGACTGATAGCACTAAACACGCAGAGATCGCCTATCGGCTCAGTAACCGTTACAGGGAATCCTTACATTTTTGCAAGGGTTGGCGGCGATGTAACATTCGAGAACGTGGATATACAAGGAAACCCTACATTCCTACTTACAAATCGAGAGCCTGCAAGTGTTTCGTTCATCGGAACATCAACAATAGGCGCTGGCACCTTAAGGGAGACCTCCGCACAAATACCACAATTAAGCCTTTATATATCAACTGGCACGACGGTAAACAACCTAACTGTAATACCAGATAAACACTATGTTTATGATAACGCTTACGAGCACCTCACTGAAGCATTGAGAATTGCACATAAAACAGGACTTGGTACGGTTGAGTTCTTGAATCAATCAGGGTCAGCAGCTGCAAAAGTGGGTAAAATTCAAAGCCAAGCATCAGGGCTTGATATGTCTGGCGATGGCGCAACTGGACACTGGTCTATAGATGGTGGAGGGACGCTTTACCCAATAACCGACAACTCATACAGAATAGGATTCGCAGGCAAGCGAGTCACCGACCTGTACATTGTAAATAATCCAACTGTTGGCTCTGACGTTAGAATTAAAACAGATAGAAGCAGCATACCCCAAGCGTTATGCGATTTTGTAATGGGGGTTGAGATAGAACAGTATAAATTAATTGGTGGCGACTCTGGTCGATATCATTATGGGATCGTAATAACCGAGGATTTTCTTGATAGGCTAAATTTGGTTTACTCGGTCGACGAATGTGCAGCTCTTTGTCATTCTGTGTTTACAGATGATAAAGGGGACCCGATAAATATGACAGTTGGGACTGTAGAGCTTGGCGACTTGTGGCAAGTTCGATACGCTGAGTGGCAAAATATCATGTTAGAGGCGATGAGGCGTAAGATTATGTCTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
62eb554b9a1ac988f6fe2dd568f6c63d7906c9f637d06a98b68854593d2d5e4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6012
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank