Protein

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UniProt accession
A0A8S5PDN6 [UniProt]
Protein name
Nucleoid-associated protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MDSIIIGKIQQYGTILKNDNTEIAYQYAENLQLSVEFTDSFFDGYSFLWLYCHDRDMVKTGVLEFDTVKSVLTLPRGAFEKEGNLYISMCAYKGSEKDMIRIPTSPVEFYITQSLNPQATNAPREPGWEDVALSLFTQIFNHDFKDRTDKVVSDAQAVIDDIKRRLENGEFTGAQGIQGPVGSQGIQGIQGPKGEQGDQGIQGIKGDKGDKGDKGADGVVTPANGMIAFTGDAAGNLYCNYSDATAPPGFEVDANNNIYMVIPD
Physico‐chemical
properties
protein length:264 AA
molecular weight: 28897,88130 Da
isoelectric point:4,46660
aromaticity:0,09848
hydropathy:-0,39318

Domains

Domains [InterPro]
DC_1266
STR
10–261
DC_1266
IPR008160
STR
173–218
IPR008160
A0A8S5PDN6
1 264
Architecture
STR
STR 10-261 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctorp6
[NCBI] 		2825673 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE04784.1 [NCBI]
Genbank nucleotide accession
BK015394 [NCBI]
CDS location
range 7170 -> 7964
strand -
CDS
ATGGATAGCATCATAATCGGAAAAATACAACAGTATGGGACGATATTAAAAAATGACAATACCGAAATCGCATATCAATATGCTGAGAACCTACAGCTGTCGGTTGAATTCACTGACAGCTTTTTTGATGGCTATTCCTTTCTGTGGCTGTATTGCCACGATAGGGATATGGTGAAGACTGGTGTACTGGAATTTGATACAGTCAAGAGTGTACTGACCTTGCCACGAGGAGCCTTTGAGAAAGAGGGCAATCTCTATATCTCGATGTGTGCTTATAAAGGCTCAGAGAAAGATATGATCAGGATACCAACATCACCGGTGGAATTTTACATCACGCAGTCACTCAATCCACAGGCTACGAATGCTCCAAGGGAGCCGGGATGGGAAGACGTTGCATTATCCTTGTTTACTCAGATATTCAATCATGATTTCAAGGATAGGACTGATAAGGTCGTATCTGATGCACAGGCAGTAATTGACGATATCAAGAGACGACTGGAGAACGGAGAGTTTACAGGTGCTCAGGGGATTCAGGGACCTGTCGGATCGCAGGGTATCCAAGGAATACAAGGACCAAAAGGAGAGCAGGGAGATCAAGGTATCCAAGGAATCAAGGGAGATAAAGGTGATAAAGGCGATAAGGGAGCAGATGGTGTCGTAACGCCGGCAAATGGCATGATCGCATTTACAGGGGATGCAGCAGGAAATCTCTATTGCAATTATTCTGATGCGACTGCACCACCTGGCTTTGAGGTTGATGCGAATAACAATATCTATATGGTCATACCGGATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1d0fcee5f85671418a9a36af0c33f2bf521af033a4962fbac4dff79b1640f932
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7510
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50