Protein

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Genbank accession
QDJ97426.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MFSNAPKATSNDGGVVPGNKPSIGNNDARKVVHYIEQIFDPDIHPIELMSKYIVPEEGELVVDMPNHVFYEVEHVDRHATWKTTLGPWNPIPEASGNDYTLFPKHEYGFLQGEMALMIDYSVRPPVARVDANCVAPNAAYAHLYNGDVFQDTDIISATYSGVDFIDNKIPVSPVVLDNFENLTIMGANTFSVQRSDKELPNGSRCSLIFKDQAGRPIPPIYPLAVQHCSHLRDHELGTRYVKSIELISPWFTNTSNPKTLFIRINVLLKTVEFRARVHYSDGTSSDPVPVNTFNGNNGFKLLGLDQWKPTVPGQSSDSLVLTYAFAEHEQAYMAQPGQPRHMSEKYTIVAVPGEGTYTPRIYSYPYWDNMNGWKLKHFLTDLDRKYCRDVTDIVTLNESSPAFDGRKYGEEQNLIFNLNMRDVSASYEPWSFMQHTSPTLYNDATAEGRKWDVRHSRGKPPFVSMTVEYIAQAGGGVKAKFAGIANDKEFLDKGYWAFDPLMDPLTEIKAPTPTHFDLVRVNGSVRTGIPIAGWKELPIDAFSLTPGEGLFIRWVRRESDGNEFQLGVSAAVSKKVSVFS
Physico‐chemical
properties
protein length:580 AA
molecular weight: 65076,61020 Da
isoelectric point:5,67147
aromaticity:0,11207
hydropathy:-0,37638

Domains

Domains [InterPro]
DC_1319
STR
1–580
DC_1319
QDJ97426.1
1 580
Architecture
STR
STR 1-580
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ97426.1
1 580
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,8108
Central domain 17 224 209 0,8677
C-terminal 225 580 355 0,6272
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-224
C-terminal
225-580

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage D6
[NCBI] 		2593322 Uroviricota > Caudoviricetes > Chimalliviridae > Ludhianavirus D6 >
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ97426.1 [NCBI]
Genbank nucleotide accession
MN131137 [NCBI]
CDS location
range 258089 -> 259831
strand +
CDS
ATGTTTAGTAACGCACCTAAAGCCACCAGTAATGACGGTGGTGTCGTTCCGGGTAACAAACCCAGCATCGGTAATAATGACGCTCGCAAGGTCGTCCATTATATCGAGCAAATTTTCGATCCCGATATTCACCCCATCGAGCTGATGTCCAAGTACATCGTTCCTGAAGAGGGTGAACTCGTAGTAGACATGCCGAACCATGTTTTCTACGAGGTAGAACATGTGGATCGTCACGCCACTTGGAAAACGACCCTTGGTCCTTGGAACCCGATTCCCGAGGCCAGTGGTAATGACTACACCCTGTTCCCGAAACACGAATACGGTTTCTTGCAGGGTGAAATGGCACTGATGATCGATTACAGTGTCCGTCCTCCTGTGGCTCGGGTCGATGCAAACTGCGTCGCTCCTAATGCAGCATACGCTCATCTCTATAACGGTGATGTGTTCCAGGATACTGACATTATTTCAGCCACTTATTCTGGTGTTGATTTTATCGACAACAAAATCCCGGTATCCCCGGTTGTTCTCGATAACTTCGAAAACCTCACCATTATGGGTGCGAATACGTTCTCTGTCCAACGAAGTGATAAGGAACTCCCTAACGGTTCACGGTGTAGCCTGATCTTCAAGGATCAAGCGGGTCGACCGATCCCACCCATCTATCCGTTGGCTGTTCAGCACTGCTCTCATCTCCGTGACCATGAGCTGGGTACTCGCTACGTTAAGAGCATTGAACTCATCTCTCCATGGTTCACCAATACGTCCAATCCGAAGACCCTGTTTATCAGGATCAACGTATTGCTGAAGACGGTTGAGTTCCGTGCACGAGTTCACTACTCCGACGGTACTTCTTCTGATCCGGTTCCTGTGAATACCTTCAACGGTAATAACGGGTTCAAACTCTTGGGTCTGGACCAGTGGAAACCGACAGTACCTGGTCAGTCTTCTGACAGTCTGGTTCTGACGTATGCATTCGCTGAACACGAACAGGCTTACATGGCCCAACCTGGTCAGCCTCGTCATATGTCCGAGAAGTACACCATCGTTGCTGTCCCTGGTGAGGGTACGTACACTCCGCGTATCTACTCCTACCCGTATTGGGATAACATGAACGGTTGGAAGTTGAAACACTTCCTGACTGACCTGGATCGCAAGTACTGTCGTGACGTCACTGACATTGTCACACTGAACGAATCCAGTCCTGCGTTTGATGGCCGTAAGTATGGTGAAGAGCAGAACCTGATCTTCAACCTGAACATGCGTGATGTCTCCGCTAGCTATGAACCCTGGTCGTTCATGCAACACACCTCTCCAACGTTGTACAACGATGCAACAGCGGAAGGACGTAAGTGGGATGTTCGTCATTCTCGTGGTAAACCGCCATTCGTGTCGATGACTGTCGAGTACATTGCTCAAGCTGGTGGTGGTGTTAAGGCCAAGTTCGCCGGGATTGCCAATGACAAAGAGTTCCTTGATAAAGGTTACTGGGCATTCGATCCTCTTATGGATCCGCTCACTGAAATCAAGGCTCCGACTCCGACCCACTTCGATCTCGTTCGGGTCAATGGTTCTGTTCGGACCGGTATTCCTATTGCTGGCTGGAAAGAACTTCCCATCGATGCGTTCAGTCTCACTCCGGGTGAAGGTCTCTTCATTCGTTGGGTACGTCGTGAATCCGATGGCAATGAATTCCAACTCGGTGTTTCTGCTGCTGTCAGTAAGAAAGTCTCTGTGTTCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ed3c0a1a8d6bde956f792b57d3d5ca10e40fec80d1f8f2b2b54555b2a6bb4418
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3863
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Aeromonas hydrophila bacteriophage D6 Rai,S., Tyagi,A., Kumar,N. and Singh,N. 2020-06-10 — GenBank