Protein

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Genbank accession
YP_009615726.1 [GenBank]
Protein name
tail fiber protein proximal subunit
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,51
TF
Evidence RBPdetect2
Probability 0,50
Protein sequence
MAELKRKFRAQEGLDAAGEKVINVAKADRTVMSDGVNVEYLIQENTLQQYDSTRGYPEHFAVIYDNRIWVSNREIAAPAGDFTELYWNSVRTDAKWKTVSSGTTNLKSGDFISADTAGRTDMKFILPSNPQDGDTIFIKDIGGQPGYASLTVDASIQSILWMGSQIRTAQMTHPYSQMVFVFSNRLWQLYISDNESRATYITPASIHEAQAGENLVRRFTSGAEVFITLPKHANNGDIISVVDLDSLNPLFHTTLKTYDQNTSIGQVGTHEMQFRTSGDGFVVFDSADNLWRVWDGDLRTRLRIVTEDTDVRPNSHIMVFGVNNDEIKTVNLNLPESPAIGDTVKISLNYMRKGQTVNINATGTDTIASNIELLQFPKRSDYPPGATWVQSSTLTFNGDESYVPILDLSYIEDENSQYWVVADNTPTVERVDSTNDETRARLGVIALATQEQANKDKEDNPEKELAITPETLANRIATKIRRGIARLATQAELEVKTGGTLLDDVIVTPKVLNDRTALEDRQGLAELATQSETNDGVDDSRIVTPKKLHNRKASEILTGILALVKTGISTLAGVDRDTKGSNIYDYADNEKAVTPASLFENKATYTSQGGSYLATETEVIQGTPHDPKVPTVVTPVELHKKTATETRIGFSEIATQNEVNTGTDDFRYVTPKKLNGRNATEDLTGISRVATDAEFAAGELDNVISTPKKIKNYFSSPDRKSVVTESGLVESGNSWDHYNLDIQKASETQRGTLQLATQVLTDAGVDDTTAVTPKKLQAKKTSETSEGIIQIATQSETTSGTVGNKAVPPKHLKYAIQEQPDWEASPLRRGPVKLTEGALTFVGDKEFGSGVKFDATTGLYINDNDKLNAGNYFKSGYAISPFEMNKTLQNFLPINATAVNSHKLDNLDSTQFIRRDIDQTVEGSLTLTQQTNTSAPLVSSSTAKFVSMLVTTEATIGDATGHSVINLDAKTNKWVIDGQANSQYLDFTAGTTDVLKLKRDGDVNVAQTLSAGNRVDASKGFSVEGGIMVINPTANNIQIGSQSKATNIQTTDAGNLKVTDTSGSSVILTTKNAVTIVGNNFVNKAGDSMSGRLDISAAMSSVITEAKAIGPLTNETVGNWSAEITTEDIYKTLPGFMVPIYSDDGGGKVIIGYADYDPADVSKRGVRAPGVLSQIGTSKKEFTYQIWNPRPATAYTDAKSSLWIRTYDPVKGAFNEWGRVYTTEAPVTSAEIGAVSTAGSSFNNLTIRDWLQIGNVRITPNPDTQSVDFTWIP
Physico‐chemical
properties
protein length:1273 AA
molecular weight: 138720,74300 Da
isoelectric point:5,01231
aromaticity:0,07148
hydropathy:-0,40204

Domains

Domains [InterPro]
DC_1986
ATT
6–126
DC_1986 DC_1209
IPR048391
ATT
1113–1221
IPR048391
YP_009615726.1
1 1273
Architecture
ATT
STR
ATT
STR
ATT 6-126 | STR 342-1112 | ATT 1113-1221 | STR 1222-1258 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009615726.1
1 1273
Domain Start End Length (AA) Confidence
N-terminal 1 842 842 0,9128
Central domain 843 1041 200 0,2449
C-terminal 1042 1273 231 0,6845
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-842
Central
843-1041
C-terminal
1042-1273

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Melville
[NCBI] 		2041413 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gelderlandvirus
Host Salmonella enterica subsp. enterica serovar Newport
[NCBI] 		108619 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009615726.1 [NCBI]
Genbank nucleotide accession
NC_042044 [NCBI]
CDS location
range 142693 -> 146514
strand +
CDS
ATGGCCGAATTAAAACGTAAGTTCAGAGCTCAAGAAGGTCTGGACGCTGCGGGTGAGAAAGTCATCAACGTTGCCAAGGCGGATCGCACGGTCATGTCCGATGGCGTTAACGTTGAATATCTTATCCAAGAAAACACATTACAACAATATGACAGTACTCGTGGTTATCCAGAGCATTTTGCTGTCATTTATGATAATCGTATTTGGGTGTCTAATAGAGAAATTGCTGCGCCAGCAGGCGATTTTACTGAGCTTTACTGGAATTCTGTGCGCACTGATGCAAAATGGAAAACAGTGTCATCGGGAACCACAAATTTAAAATCAGGTGATTTTATTTCAGCTGACACCGCTGGAAGAACAGATATGAAATTCATTCTTCCTAGCAATCCGCAGGATGGCGATACCATTTTTATTAAAGATATCGGTGGTCAGCCAGGATATGCTTCTCTTACTGTCGATGCATCTATTCAATCCATATTATGGATGGGTTCTCAAATAAGAACCGCTCAAATGACGCATCCATACTCACAAATGGTTTTCGTTTTCAGCAATCGTTTGTGGCAACTTTATATAAGTGACAACGAATCAAGAGCCACTTATATAACTCCAGCTAGTATTCATGAAGCGCAAGCAGGCGAAAATCTAGTTAGAAGATTTACTTCTGGCGCAGAAGTTTTTATTACTCTTCCTAAACATGCTAACAACGGTGATATAATTTCTGTAGTTGATTTAGATTCTCTTAACCCATTGTTTCATACTACATTAAAAACTTATGACCAAAATACTAGTATAGGTCAAGTTGGAACTCACGAGATGCAGTTCCGTACTTCTGGAGATGGATTTGTAGTATTTGATTCAGCCGATAATTTATGGAGAGTATGGGACGGTGATTTACGTACCCGCTTGCGTATTGTAACTGAAGATACTGACGTTAGACCAAATTCTCATATCATGGTTTTTGGGGTTAACAATGATGAAATAAAGACAGTTAATCTAAACTTGCCCGAATCTCCAGCTATTGGAGACACAGTAAAAATTTCTCTTAATTATATGAGAAAAGGGCAAACAGTTAATATAAACGCTACTGGAACTGACACAATAGCTTCAAATATTGAACTTTTGCAATTTCCAAAACGCTCTGATTATCCGCCTGGAGCTACTTGGGTTCAAAGCAGTACTTTAACGTTCAATGGTGATGAATCTTATGTTCCAATTTTAGATTTATCTTACATAGAAGATGAAAACTCTCAATATTGGGTAGTTGCAGATAATACTCCGACCGTTGAAAGAGTCGATTCGACTAATGACGAGACCCGAGCTCGTTTAGGTGTTATTGCTTTGGCAACCCAAGAGCAAGCTAATAAAGATAAAGAAGATAATCCAGAAAAAGAATTAGCGATTACTCCAGAAACTTTGGCGAACCGTATTGCTACTAAAATCCGGCGCGGTATTGCTCGTTTAGCTACTCAAGCTGAATTAGAAGTTAAAACTGGCGGGACTTTATTAGATGATGTGATTGTTACTCCGAAAGTTCTGAATGACCGTACTGCTTTAGAAGACCGTCAAGGCCTCGCTGAATTAGCAACTCAATCAGAAACTAACGATGGTGTTGATGATTCTAGAATTGTAACTCCGAAAAAGTTGCATAACCGTAAAGCTTCAGAAATATTAACCGGTATTTTGGCGTTAGTTAAAACTGGAATTTCAACTCTTGCGGGTGTAGATAGGGATACAAAAGGCAGTAACATATATGACTATGCCGATAATGAAAAAGCTGTAACTCCGGCTTCTTTATTTGAAAACAAAGCTACATATACATCACAAGGTGGTTCATACTTAGCTACAGAAACCGAAGTTATTCAGGGTACTCCACATGACCCTAAAGTACCTACGGTAGTAACTCCGGTCGAATTGCATAAGAAAACTGCTACTGAAACACGTATTGGTTTTAGTGAAATTGCTACGCAAAACGAAGTCAATACTGGGACGGATGATTTCCGTTATGTTACTCCTAAGAAATTAAATGGCCGTAATGCTACGGAAGATTTAACTGGTATTTCGCGAGTCGCGACAGACGCTGAATTTGCTGCAGGTGAATTAGATAATGTTATTTCTACTCCTAAAAAGATTAAGAATTACTTTTCTTCTCCTGACCGTAAATCTGTTGTTACTGAATCTGGATTAGTTGAATCAGGTAACTCCTGGGACCATTATAACCTTGATATTCAAAAAGCATCTGAGACGCAACGCGGCACATTACAATTAGCCACGCAAGTTCTCACTGACGCTGGGGTTGATGACACGACTGCTGTAACTCCGAAAAAGTTACAAGCTAAAAAGACATCTGAAACTTCTGAAGGCATTATTCAGATAGCGACTCAGTCAGAAACAACAAGTGGTACTGTAGGAAATAAAGCTGTTCCTCCGAAGCATCTAAAATATGCTATCCAAGAACAACCTGATTGGGAAGCTTCTCCTCTTCGTAGAGGCCCAGTTAAATTAACAGAAGGCGCTTTAACATTTGTTGGTGATAAAGAATTTGGTTCTGGTGTCAAATTCGACGCTACAACCGGTCTTTATATTAATGATAATGACAAATTAAATGCCGGAAATTATTTCAAATCTGGATATGCTATATCTCCTTTTGAAATGAACAAGACTCTTCAAAACTTTTTGCCAATAAACGCAACTGCTGTTAATTCGCATAAGTTAGATAATCTTGATTCAACTCAGTTCATCAGAAGAGATATTGACCAAACGGTTGAAGGTTCGTTAACGTTAACGCAACAAACGAACACTAGTGCTCCTCTAGTATCCTCTAGTACTGCGAAGTTTGTTAGTATGTTGGTTACCACAGAAGCTACTATCGGGGACGCTACGGGTCACTCTGTGATTAATTTGGACGCTAAAACCAATAAATGGGTTATTGATGGACAAGCTAATTCTCAGTATTTAGATTTTACTGCTGGAACTACAGATGTTCTTAAGCTCAAACGAGATGGAGACGTTAACGTAGCCCAAACATTATCGGCTGGTAATAGAGTAGATGCTTCAAAAGGCTTTAGTGTCGAAGGTGGTATAATGGTTATTAATCCTACCGCCAACAATATTCAAATTGGTTCACAATCTAAAGCTACTAATATCCAAACAACAGACGCCGGAAACTTGAAAGTTACTGATACATCAGGCTCTTCGGTGATATTGACCACTAAAAACGCTGTTACTATCGTAGGTAATAACTTCGTTAATAAAGCTGGCGATTCAATGTCTGGCCGTTTAGATATTTCTGCTGCAATGAGTTCAGTAATTACTGAAGCTAAAGCGATAGGTCCTCTTACTAACGAAACTGTGGGTAATTGGTCAGCAGAAATCACAACTGAAGATATCTACAAAACATTGCCTGGATTTATGGTTCCAATTTATTCTGACGATGGCGGTGGTAAAGTAATTATAGGTTATGCAGATTATGACCCGGCTGATGTATCAAAACGCGGTGTAAGAGCTCCGGGTGTATTATCTCAGATTGGAACGAGTAAAAAGGAATTCACATATCAAATATGGAACCCTCGTCCAGCTACAGCTTATACAGATGCTAAATCTTCTCTTTGGATTAGAACCTATGACCCAGTTAAAGGTGCATTCAATGAATGGGGAAGAGTTTACACTACTGAAGCACCAGTTACGTCTGCTGAAATTGGTGCCGTTTCTACAGCTGGTTCTTCATTTAATAACTTAACAATCAGAGACTGGTTACAGATTGGTAATGTTCGCATTACGCCTAATCCTGATACCCAATCTGTTGATTTTACTTGGATACCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a7b12fe53209fcac6686281ff73223240f05b4419a7b12f047815d3dfb443188
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5572
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genome of Salmonella phage Melville Zhang,K., Xie,Y., Liu,M. and Gill,J. 2019-04-25 — GenBank