Protein

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Genbank accession
YP_009835868.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MQYLYVDPSDDVNKPIPSAFKTVTAAIAAITSYPFSILIRRGTVLKEAVNARLVNTSSDMSFFDTYGEGPPPKWLSTSNSAGQLASWNARRITVQNIHFMDRDDGFLSSATSVNLQCSGDASGLADVHVKNCYFTGNAYSVSNPTKNTVGRHVQLFAVAYDNTATPAHKLSVEDCMFNMVNAGVYIRGNTYAADTTDNRGDGSRTYGAKVLRCSFTNVVQEGVLMHTCTSKNDVYTDDEWQSCVRDCYYSSYRWDKFTTAGVSTYDAPFWMWHCNRVLFEKLEVHGSYPMAPDNMAVDIDGMCWDNVVRYVYSTGCARTVMFVSADNAGLQSAPPAGMSNFEFYYTRRQGSGNNVVEYCFAFNDGIQRLQGQIGTPTNDACSISHHRNQFNNTVRNCVFIDTSSVKQRRLISTNGYDTESASVPSLTVENCIFYCKWMTGSDIIAQLSTGTRTIAPASQIILNNNIIWSDAWSAAPDLSALATLSGNVWAKPQYALLPPSPPSTRRGAINLGVPANAKGVGKSNLLLDINGRSGNNIGWLQ
Physico‐chemical
properties
protein length:541 AA
molecular weight: 59428,87360 Da
isoelectric point:6,50121
aromaticity:0,10536
hydropathy:-0,25157

Domains

Domains [InterPro]
DC_1961
STR
1–541
DC_1961
IPR011050
STR
82–261
IPR011050 IPR011050
IPR012334
STR
250–533
IPR012334
YP_009835868.1
1 541
Architecture
STR
STR 1-541
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009835868.1
1 541
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1101
Central domain 11 508 499 0,9955
C-terminal 509 541 32 0,8558
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-508
C-terminal
509-541

Taxonomy

  Name Taxonomy ID Lineage
Phage Raoultella phage Ro1
[NCBI] 		2053702 Uroviricota > Caudoviricetes > Vequintavirinae > Mydovirus Ro1 >
Host Raoultella ornithinolytica
[NCBI] 		54291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009835868.1 [NCBI]
Genbank nucleotide accession
NC_048682 [NCBI]
CDS location
range 109595 -> 111220
strand +
CDS
ATGCAATATTTATACGTAGACCCTTCCGATGATGTAAATAAACCAATTCCGTCAGCATTTAAAACTGTTACGGCTGCTATAGCGGCAATCACCAGCTACCCCTTTTCAATACTAATCAGGCGCGGCACAGTATTGAAGGAGGCGGTTAATGCCCGGTTAGTGAACACGTCGTCTGACATGAGTTTTTTTGACACATACGGAGAAGGACCACCTCCTAAATGGCTGTCCACCTCAAACTCAGCGGGGCAACTCGCATCGTGGAACGCCAGACGCATCACGGTACAGAATATTCACTTTATGGATAGGGATGATGGATTCCTGTCGTCAGCAACCAGCGTTAACCTCCAGTGCAGTGGTGACGCTAGTGGGCTTGCAGACGTTCACGTCAAAAACTGCTACTTCACTGGTAATGCGTATTCTGTCAGTAATCCGACGAAAAACACCGTTGGGAGACACGTGCAGCTGTTCGCTGTCGCATATGATAACACTGCTACACCTGCACATAAACTTAGCGTAGAAGACTGCATGTTTAACATGGTCAACGCTGGGGTTTATATTCGCGGGAATACCTATGCTGCCGACACAACGGATAACCGAGGCGATGGTAGCAGAACATACGGTGCAAAAGTGCTGCGCTGCTCTTTCACTAACGTCGTGCAAGAAGGCGTGCTAATGCACACCTGTACCAGCAAAAATGACGTATACACTGATGACGAGTGGCAGAGCTGCGTCCGGGACTGCTATTACAGTTCATACCGCTGGGATAAATTCACCACGGCTGGAGTGTCGACGTATGACGCGCCGTTCTGGATGTGGCACTGTAATCGAGTCCTGTTTGAAAAACTTGAGGTGCATGGCTCATATCCAATGGCGCCTGACAACATGGCTGTTGACATTGATGGGATGTGCTGGGATAACGTTGTCAGATACGTTTACTCCACTGGCTGCGCCCGTACAGTTATGTTTGTCTCTGCTGATAACGCAGGGTTGCAGTCAGCTCCACCTGCCGGGATGAGCAACTTTGAGTTTTATTACACACGCCGTCAGGGGAGTGGTAATAACGTAGTGGAATACTGTTTCGCGTTCAACGATGGCATACAGCGACTGCAAGGGCAGATTGGCACACCAACAAACGACGCCTGTTCCATATCTCACCACCGCAACCAGTTCAATAATACTGTCCGTAATTGCGTGTTTATTGACACGTCCAGCGTCAAGCAGCGCCGTCTGATATCAACAAACGGGTACGACACTGAGAGTGCGTCTGTTCCGTCGCTGACGGTAGAGAACTGCATTTTCTACTGCAAGTGGATGACGGGGTCAGACATCATTGCACAACTGTCGACGGGAACCAGAACGATTGCGCCAGCGTCTCAAATTATCCTCAACAATAACATCATCTGGTCTGATGCGTGGAGCGCGGCACCTGACCTGAGCGCCCTCGCTACGCTGAGCGGCAATGTCTGGGCGAAACCGCAGTATGCGCTGTTGCCCCCCAGCCCACCGTCAACCCGTCGTGGGGCAATTAACCTGGGTGTCCCGGCGAATGCAAAGGGGGTCGGTAAGTCAAACCTGCTGCTCGATATCAACGGGCGTTCAGGCAATAACATTGGCTGGTTACAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3d4c01daa0de230ef3e19107cf63b53670de93d7db0eb0d0f1d3e94c811ec505
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7717
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparation Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank