Protein

View in Explore
Genbank accession
YP_010661460.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MPRKTIDQLPVASPEAVATGTLLIADENGLEYRATTAILGGVHLFFTDEADQTPFVFGRLTSPGRTVENTLITLTATPVGGGTAVVKTASTDALGNFTYDFTSSLARGASYTIEAKAAPYLTETTTKTIAALAAPTASLTATSTAKVGDEINVDPPSFSGSPTVIRYRYLRGASYVIPGATSSTYVLQPDDDADIITPQIQATNAGGDSPWYSATAIGPVTNKTSVLLTNPVIAGSTALGGRITVSDQGSASNNATVKSDEWQLDGAKIPTTKAPLQRYFSGAAGSTVPTAYPDGSNHHGVSLSSASYTGSNTYSYSIGISATENDYIISAIGSAGGNEGPQVYDLYVKHLNTNAALRFQLFASKYRGGVLQEEVQMSKVGVAAGTELNELTATANALNHWTLTHDFGEWLTGDYLVFRQRARNTSGSSTNNYQWDARSGASYAMLPIGAVNDLQKTLSSFTTRADMAGKKVRLARTYSNRNNDVIGYSNEITLEAAATQTVAPANVTLPAIVAASDRSNNTWQADFGAWSNQPNEFAIQWLDNGADISGATQMSYKIPSTLEGHDVSFRVTATNDIGSTSAVSVAKTVLPAAVFYKTDTGNDSNDGSTPELAKQTLNGSDTIPSGSTAIMQGDFGTRLRLGTGRNYEGTDTALTSIGNPSTASYAIDQYTDDGSLGRSNVKISKLRIKSGDRAINARQGSNWTIEDVILENVGFTPIGGIAENASGMMFYKNNGLTLRRVQFLLVNSDALFSDTNDKVIIEDCTFLPVFTAEGDTIQTRADRLVNNAPGPHQKGLVIRGTYLDMHSRKTSSGKGCLVTNMQDYAYIHDNKMDGNNFVHGTDEGDNHVFARNVCGYARKNTYSFGYGIGGYDDQPASHNHHVYDNSWYDIVRAHSYTGIPVTGYTGSKSGRVDIMVHDETVVKCSVGMRVDRPTSGKFRGWVFHNVGKTLDRTNTTIPPGGEINAFIWSDHYTYSGAVLLPPAVTTRATITGTRASGSVLTGGDSVFDTAAVLAAFPSAVITRSYQWRRHKPAVKWTGWSEGLGWLCEWIDGATSSSYTVTDDDQGCLISRVDRIHLTFTEGGVSKTVTALAYDGSYKDSAPITRTGDLAVALPTLATSSNISASATEGTLVLDLPALLTGETRTLLNTSRSYDPYTGTSVTVDSNGDIARGAGALTVGSTFSVKVRQKRGPDIADTSITFTVIT
Physico‐chemical
properties
protein length:1205 AA
molecular weight: 128193,48210 Da
isoelectric point:5,61333
aromaticity:0,08299
hydropathy:-0,25328

Domains

Domains [InterPro]
DC_0400
STR
1–225
DC_0400 DC_1007 IPR011050 G3DSA:2.60.40.2700
G3DSA:2.60.40.2700
RBD
503–588
G3DSA:2.60.40.2700 DC_2223 DC_0572
YP_010661460.1
1 1205
Architecture
STR
ATT
STR
RBD
STR 1-225 | ATT 485-613 | STR 614-963 | RBD 964-1205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010661460.1
1 1205
Domain Start End Length (AA) Confidence
N-terminal 1 233 233 0,8366
Central domain 234 465 233 0,6940
C-terminal 466 1205 739 0,1589
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-233
Central
234-465
C-terminal
466-1205

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_N34
[NCBI] 		2509586 Uroviricota > Caudoviricetes > Pootjesviridae > Trinifflemingvirus > Trinifflemingvirus N34
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010661460.1 [NCBI]
Genbank nucleotide accession
NC_070884 [NCBI]
CDS location
range 60822 -> 64439
strand -
CDS
ATGCCGCGGAAAACTATCGATCAACTTCCTGTTGCTTCACCTGAAGCAGTTGCAACAGGAACTCTTCTTATCGCTGACGAGAACGGTCTCGAATATCGCGCGACTACTGCCATTCTCGGCGGCGTCCATCTGTTCTTCACGGACGAGGCCGACCAGACTCCTTTCGTCTTCGGTCGTCTCACGAGTCCTGGTCGTACGGTCGAAAACACTCTGATCACACTCACTGCTACTCCTGTTGGAGGTGGCACTGCTGTTGTGAAGACCGCTTCGACTGACGCTCTCGGAAACTTCACGTACGATTTCACGTCTTCGCTTGCTCGTGGTGCGTCTTATACGATCGAGGCGAAAGCTGCACCGTATCTCACCGAAACGACCACGAAGACTATTGCAGCTCTGGCAGCTCCGACTGCTTCTCTCACTGCTACGTCTACTGCGAAGGTAGGTGACGAAATTAACGTTGATCCTCCGTCGTTCAGCGGAAGTCCGACTGTAATCCGTTATCGCTATCTACGAGGTGCGTCTTACGTCATTCCTGGAGCGACCAGCTCTACTTACGTTCTCCAGCCTGATGACGATGCTGACATCATCACTCCTCAGATCCAGGCTACTAACGCAGGCGGTGACAGTCCTTGGTATTCTGCTACAGCTATCGGTCCTGTAACGAACAAGACCTCCGTTCTCCTCACGAACCCTGTGATTGCTGGATCGACTGCTCTCGGTGGTCGTATCACGGTTTCTGACCAAGGTTCTGCTTCGAACAATGCTACTGTGAAGTCTGATGAATGGCAGCTTGATGGAGCGAAGATCCCGACTACGAAGGCTCCTCTCCAGCGTTACTTCTCTGGTGCTGCCGGCTCTACTGTTCCTACTGCTTATCCTGACGGTAGTAATCACCACGGCGTGTCGTTGAGCTCGGCTTCGTACACTGGTTCGAACACGTACAGCTATTCTATCGGCATCAGTGCTACAGAAAACGACTATATCATTTCTGCTATCGGTTCAGCTGGTGGAAACGAAGGTCCTCAGGTATACGATTTGTATGTCAAGCACCTGAATACGAATGCCGCGCTTCGCTTCCAGCTTTTCGCTTCCAAGTATCGAGGTGGCGTTCTGCAAGAAGAAGTGCAGATGTCGAAGGTAGGTGTTGCTGCTGGAACAGAGCTTAACGAACTCACTGCTACTGCCAATGCTCTCAATCATTGGACTCTGACTCACGATTTCGGGGAATGGCTTACAGGTGACTATCTCGTCTTCCGTCAGAGAGCTAGAAACACGTCCGGGTCTAGTACGAACAACTACCAGTGGGATGCTCGAAGCGGTGCTTCGTACGCGATGCTTCCGATCGGTGCTGTGAACGACCTTCAGAAGACTCTTTCCTCGTTCACAACTCGTGCTGACATGGCTGGTAAGAAGGTTCGTCTCGCTCGTACGTATTCGAACCGGAACAACGACGTCATCGGCTACTCGAACGAGATCACTCTCGAAGCTGCTGCTACTCAGACTGTTGCTCCTGCGAACGTTACTCTTCCTGCTATCGTTGCTGCTTCTGATCGTTCGAACAACACCTGGCAGGCAGACTTCGGTGCATGGAGCAATCAGCCTAACGAGTTCGCTATCCAGTGGCTTGACAACGGTGCCGACATCTCCGGTGCTACACAGATGAGCTATAAGATTCCGTCTACTCTCGAAGGTCATGACGTGTCCTTCAGAGTCACGGCTACCAACGACATAGGATCTACTTCGGCCGTGAGTGTTGCGAAAACAGTTCTTCCTGCTGCTGTCTTCTACAAGACCGACACAGGTAACGACTCTAATGACGGTTCCACTCCGGAACTAGCCAAACAGACCCTGAACGGATCTGATACCATTCCGTCTGGTTCTACTGCTATCATGCAAGGTGATTTTGGTACTCGTCTGAGGCTCGGCACTGGACGAAACTACGAAGGTACGGACACCGCTCTGACTTCGATCGGTAATCCTTCTACAGCATCTTACGCGATCGACCAGTATACTGACGACGGTTCTCTCGGTCGGTCGAACGTGAAGATCTCGAAACTTCGTATCAAGTCTGGCGACCGTGCTATTAATGCGCGTCAAGGTTCAAACTGGACGATTGAAGACGTCATTCTCGAGAACGTAGGCTTCACTCCAATCGGCGGTATTGCCGAAAACGCATCTGGGATGATGTTCTACAAAAACAACGGCCTCACGCTTCGTCGAGTCCAGTTCTTGCTCGTCAACTCGGACGCATTGTTTTCTGACACGAACGACAAGGTGATCATCGAAGACTGCACGTTCTTGCCTGTGTTTACAGCAGAAGGTGATACCATCCAGACCAGAGCAGATCGTCTCGTGAACAATGCTCCTGGTCCTCACCAGAAAGGTCTCGTGATCAGAGGAACCTATCTTGACATGCACTCGAGAAAGACTTCGTCTGGTAAAGGCTGTCTCGTAACGAACATGCAGGACTATGCCTACATCCATGACAACAAGATGGATGGCAACAACTTCGTTCACGGTACTGACGAAGGTGACAACCACGTCTTCGCTCGAAACGTCTGCGGATATGCTCGAAAGAACACGTATTCGTTCGGCTATGGTATCGGTGGTTACGACGACCAGCCTGCTTCTCACAATCACCACGTCTACGATAACTCCTGGTACGATATCGTCCGTGCACACTCGTATACTGGCATTCCAGTCACTGGCTACACGGGTTCGAAGTCTGGTCGTGTCGATATCATGGTTCATGACGAGACTGTTGTGAAGTGCTCCGTCGGTATGCGTGTTGACCGTCCGACTTCTGGTAAGTTCCGCGGATGGGTCTTCCATAACGTCGGCAAGACGCTCGACAGAACAAACACGACCATTCCTCCTGGCGGCGAAATCAATGCATTCATCTGGAGTGATCACTACACCTACAGCGGTGCAGTTCTTCTTCCTCCGGCTGTCACGACTCGCGCGACGATCACCGGAACTCGTGCTTCTGGTTCTGTTCTTACCGGTGGTGATTCCGTCTTTGATACGGCCGCTGTTCTCGCTGCATTCCCGAGTGCTGTGATTACTCGTTCGTATCAATGGCGTCGTCACAAGCCTGCTGTCAAGTGGACTGGCTGGTCTGAAGGTCTGGGTTGGTTGTGCGAATGGATCGACGGAGCTACTTCTTCGAGCTACACAGTCACCGACGACGATCAAGGTTGTCTGATCAGTCGCGTAGATCGTATCCATCTCACGTTCACTGAAGGTGGTGTATCGAAGACTGTCACGGCTCTCGCTTACGACGGTTCGTATAAGGACTCGGCTCCGATCACGAGAACTGGAGATCTCGCTGTTGCACTTCCAACTCTTGCAACTTCGTCGAATATCTCCGCTTCTGCAACTGAAGGCACTCTCGTTCTCGATCTCCCTGCACTGCTTACCGGAGAGACGAGAACTCTTCTGAACACGAGCCGCTCTTACGATCCGTACACCGGAACTTCAGTAACCGTTGACTCCAACGGAGACATCGCAAGAGGTGCAGGTGCTCTCACTGTCGGAAGCACCTTCAGTGTAAAGGTTCGTCAGAAACGCGGACCTGACATTGCTGATACTTCCATCACCTTCACCGTTATTACGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b8611b3b16d045f78a088c0d87aef547c2cec9e7275c670f7b2ab7fa0b1e2678
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2766
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank