Protein

View in Explore
Genbank accession
XOD48580.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAAVQFANNAASRLVGPLTPSGTSLTVTPGDGALFPTLGAGDWFMATLIRSDGAREIVKVTSRTVDAMSITRAQEGSSALSFNPNDRIEARLTAGELGDFRDGIASAQSAASAAQGTADGKISKAGDTMTGNLNMEGAAPIITFRETDQAAPAGRWRLVADGGSWYLRRSTAGEFSSENNTLWFGTDDSAHFQNDVLIGRGNLGSVYDALASKATSAALASGLSAKPDADGVSVTGFVNGNFYEPYFRKSSDNTVRRLVANTSANGIALSWSGSFLSRTIDNTATATIWDTANAPGAGTTNLDKTFYCGDGTRIGRSWVPGSGFLSITVDGTNYGISISASDERLKREIAPSEASALSKLGRIELFSFRYKEGNAFLDPSQHHDIGFIAQQLASVDPTFVAGGGETMLSPNLQPIVATLVKAVQELRSQVDALKAQVGA
Physico‐chemical
properties
protein length:439 AA
molecular weight: 45935,42430 Da
isoelectric point:5,18419
aromaticity:0,07745
hydropathy:-0,15057

Domains

Domains [InterPro]
DC_0891
STR
1–436
DC_0891
IPR030392
CHP
341–400
IPR030392 Coil
IPR030392
CHP
341–437
IPR030392
XOD48580.1
1 439
Architecture
STR
STR 1-437 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage YL3
[NCBI] 		3390403 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia pseudosolanacearum
[NCBI] 		1310165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD48580.1 [NCBI]
Genbank nucleotide accession
PQ295878.1 [NCBI]
CDS location
range 54905 -> 56224
strand +
CDS
ATGGCTGCCGTTCAATTCGCAAACAACGCTGCTAGCCGTCTTGTCGGCCCGCTGACGCCTTCCGGTACGTCATTGACGGTCACGCCTGGGGATGGCGCGCTTTTCCCGACGCTAGGCGCTGGCGATTGGTTCATGGCAACGCTCATCCGATCGGATGGCGCGCGCGAGATCGTCAAGGTGACGTCGCGCACGGTGGACGCCATGTCCATCACGCGCGCGCAGGAGGGCTCGTCTGCGCTGTCGTTCAACCCGAACGATCGCATCGAGGCGCGCCTGACCGCTGGCGAACTCGGCGACTTCCGTGACGGCATCGCGTCCGCACAGAGTGCCGCCAGTGCCGCGCAGGGCACGGCCGATGGCAAGATTTCCAAGGCTGGCGACACCATGACCGGCAACCTCAACATGGAGGGCGCCGCGCCGATTATCACGTTCCGCGAGACGGATCAGGCCGCTCCGGCGGGGCGCTGGCGCCTCGTGGCAGATGGCGGAAGCTGGTACTTGCGACGGAGCACGGCGGGCGAGTTCAGCTCCGAGAACAACACCCTGTGGTTTGGGACTGACGACAGCGCGCACTTCCAGAACGATGTTCTGATCGGGCGCGGAAATCTAGGCTCGGTGTACGATGCGCTGGCGAGCAAGGCCACCAGCGCGGCTCTGGCGAGCGGACTGTCCGCCAAGCCTGATGCGGATGGTGTTTCCGTTACTGGTTTCGTCAACGGCAATTTCTACGAGCCGTATTTCCGCAAGTCCTCTGACAACACCGTTCGGCGTCTCGTGGCGAACACCAGTGCAAATGGGATCGCCCTGTCGTGGTCTGGCTCGTTTCTGAGCCGAACGATCGACAACACGGCCACTGCGACGATCTGGGACACCGCAAATGCGCCCGGCGCCGGCACCACCAACCTCGACAAGACATTCTACTGCGGCGACGGCACGCGCATCGGGCGCAGCTGGGTGCCGGGCAGCGGCTTCCTTTCGATCACGGTCGACGGCACCAACTACGGCATCTCGATCAGCGCTTCCGACGAGCGTCTGAAGCGAGAGATCGCCCCGAGCGAGGCGAGCGCGCTGTCGAAGCTAGGCCGCATTGAGCTGTTCAGCTTCCGGTACAAGGAAGGCAATGCTTTCCTGGACCCGTCGCAGCACCACGATATCGGCTTCATCGCGCAGCAACTCGCCAGCGTTGACCCTACGTTCGTGGCCGGCGGCGGCGAAACGATGCTGTCCCCGAACCTTCAGCCCATCGTGGCGACGCTGGTGAAGGCGGTGCAGGAGCTGCGGTCACAGGTGGACGCCCTCAAGGCCCAGGTGGGCGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b5186fe4baf3f86449f26458c635d65fd87b62dc7ef82aeecdd3455b6ca161c2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of a Virulent Phage Cocktail Formula and Evaluation for Control of Tobacco Bacterial Wilt Disease He,H. 2025-03-13 — GenBank