Protein

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UniProt accession
A0A1D7SDJ3 [UniProt]
Protein name
Virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,97
Protein sequence
MADRFPLIVNASSRKIEELIAGDNLNLSGNGISINGSVGNADQYLRSDGFTASWGNPGDVYLTQTQTVSNKTFENCTLSGSLNIFSSIPNTALINNKININGQNVALGGSVTIANTDTTYSISALDGGTSSQKIFRLTDSGSNTDDITFEAGNNVSIARNGDVLTFSSSFTDTDTVTTLESAVGGAAVSGQVIIAAAGYASVSQSGNTITITGSNDDTITKIRAGTGQTLNPGNFTLLGGTEVAVVQGVDGNGDATITFNSSDTITRVRGGATGSYTSGDLTISGGSNVTVSQTGSTYEIDSTDTNTITKIASGSNTLSSGDFKFDSQGATTLSQATANGITTITISSVNDDTGASFTASGGVIKDSADFQLKNNGNFGANTLLKWDSGNSQIANSIITDDGSTCTITGDLVVDGTQTTLNTQTLVVSDNIIELRKGSNLVGSDSGIQVNRTTDATESVTTFVQLKWDESGGYWKSFDGSVSNRFVTETETQILTNKTLQSPTLSSPVLGVATATTLNGLEITSTANSTLSISDTKEVDFRRDFIFTSDNNASAVNVDFRLGGDVAFKSDTLGSFSSTTSTQLRGILTDPTGTGGVVFQNTPNILVSLNTTSTSFNLINSGASTINFGQGATAAINIGVSGANVQMAGNLIVDEDLTVGGSITDTILLNGIVNCENADLRIRGNSSNPMIVGRGGGEVAANTAVGYRSLLSNNAGQFCTAIGFETLFVNDSNYNTALGYQALKINSDGEDNVAVGSNAMTLNEDGNKNVAVGSHALENSTVGNHNVILGHYAGFSCYGSGNVIIGPAPDENGTNVTHTPLNATGDNQLIIGSGTEAWIRGNSSFDITIPNNTTVGGDLLVQGELTVDGTVTSVNSNVLTVDDKNIELASVVNTQFTANATSGNTTVTGVSPTSGLIPGMEVVSITDGIDLGAGATIVSISGNTFTLSNSVSGNGLVTVNATGPSDLAASGGGIILKGSTDKTIIYDHSRTDKYWTLSENLEIALGKKFVIGNQLALSSTSLGTSVVNSSLTSVGTLLGLDVDGAISLGGRVKEKTFFSFSTTLTPTSNTLSINTAGANTICGTTSSTGSPAINDWAFTDCNLSNGQSVTISLILAANTAATYGDGCSVDGSVISNGVEWSGGSPPIATSNTDILTFIIMKDNSGVTRVFGQGNTDFS
Physico‐chemical
properties
protein length:1177 AA
molecular weight: 120467,38920 Da
isoelectric point:4,20668
aromaticity:0,05523
hydropathy:-0,04146

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A1D7SDJ3
1 1177
Domain Start End Length (AA) Confidence
N-terminal 1 666 666 0,5267
Central domain 667 878 213 0,7040
C-terminal 879 1177 298 0,7617
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-666
Central
667-878
C-terminal
879-1177

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-RIM44
[NCBI] 		1278485 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus rhodeisland44
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Tertiary structure

PDB ID
12eeff26b2c16b3134876efd964ee601f541f3a749fee12422c0920fd399e6f3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5695
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50