Protein

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Genbank accession
XLM26976.1 [GenBank]
Protein name
FAD/FMN-containing dehydrogenase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSFNSRERSLADGQPVRLYQFSRGAIRWSYNSSDRDITYQNQIFRTVQGGITDNGIICSGDPQSDQFVITAPADLDVALLYKTRSPSGAIDLVVYDMHYGDTEAAVSWVGQIGDVDWPTVDSCRITCVSEDELMDQPGLIDTYCRTCTAVVGDHRCKVNLVPYRVTLTPQSISGWVISSGVVAGYVDGWFTGGYVEWQVDGDNYDSRYIERHAGPDLYILGGTEGIPAGGQLRVYPGCDGLAQTCDDKFSNLPNFRGFNAMQGKSPFDGDQVW
Physico‐chemical
properties
protein length:273 AA
molecular weight: 30081,02820 Da
isoelectric point:4,42164
aromaticity:0,10989
hydropathy:-0,29744

Domains

Domains [InterPro]
DC_0733
STR
1–187
DC_0733 IPR018964
IPR011928
Unmapped
19–271
IPR011928
PF09931
ATT
32–159
PF09931 IPR018964
XLM26976.1
1 273
Architecture
STR
ATT
STR
RBD
STR 1-31 | ATT 32-159 | STR 160-187 | RBD 188-264 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XLM26976.1
1 273
Domain Start End Length (AA) Confidence
N-terminal 1 271 271 0,7605
Central domain 272 271 1 0,1111
C-terminal 272 273 1 0,7423
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-271
Central
272-271
C-terminal
272-273

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Cinder
[NCBI] 		3377935 Viruses >
Host Pseudomonas aeruginosa PA14
[NCBI] 		652611 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLM26976.1 [NCBI]
Genbank nucleotide accession
PQ533654 [NCBI]
CDS location
range 4825 -> 5646
strand -
CDS
ATGAGTTTTAACAGCCGCGAACGCTCGCTCGCGGATGGGCAGCCGGTGCGGCTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCACCTACCAGAACCAGATTTTCCGCACGGTCCAGGGCGGCATCACTGACAACGGGATCATCTGTTCCGGCGATCCGCAGTCCGACCAGTTCGTCATCACCGCGCCGGCCGACCTCGACGTCGCGCTGCTGTACAAGACCCGGTCGCCGAGCGGTGCCATCGACCTGGTCGTCTACGACATGCACTACGGCGACACCGAGGCAGCGGTTTCCTGGGTGGGCCAGATTGGCGATGTGGACTGGCCGACCGTGGACAGCTGCCGCATAACGTGCGTGTCAGAAGACGAACTGATGGACCAGCCCGGCTTGATCGACACCTACTGCCGCACCTGCACGGCAGTCGTTGGCGACCATCGCTGCAAGGTCAACCTCGTTCCGTATCGCGTGACGCTGACGCCGCAGAGCATCAGCGGCTGGGTGATCTCCAGCGGCGTGGTCGCCGGCTATGTCGATGGCTGGTTTACCGGGGGCTACGTCGAGTGGCAAGTGGACGGCGACAACTACGATAGCCGCTACATCGAGCGGCACGCCGGACCCGATCTTTACATCCTGGGCGGCACCGAGGGCATTCCGGCAGGTGGCCAACTGCGGGTTTATCCAGGTTGCGACGGGCTCGCGCAGACCTGCGACGACAAATTCAGCAACCTCCCCAACTTCAGGGGGTTTAACGCGATGCAAGGCAAGTCGCCATTCGATGGCGACCAGGTCTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e5baa53731b11803c02653d6fbcfe886a1ab3d0aa9390581cf1d92370c6be4ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9005
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Temperate phage-antibiotic synergy is widespread - extending to Pseudomonas - but varies by phage, host strain, and antibiotic pairing Fatima,R. and Hynes,A.P. 2024 39704503 GenBank