Protein

View in Explore
Genbank accession
QFP93390.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MLRNHMYTGSPEQKLRDIDLELRQTVKRVNGVVPDRYGNIEIELAGGGSTGKANVYVIETAKWGISPGIPAKPYKTTDYNRANNNIKGINDALVWAKNNNYNYVVLPFGSYTICYPNPVITQPNMVIDFGFSTLKVIFDSDVRSPFDLTGKPIYEFKGDSILCTTPNTKIINLTLVGDRVDRSWSKEEEKTMESTNGIKFGAGANNCRVSGCDLSYYMGDAIALYYSPYTYFDTGVTEFGTLNSNGEPVASASNKTVRSTKFSPIPSGITAFTMIGLGYRPDTSIPSGSYDVYFYDKNNVFVSFRKNIRTRDPVQVPSKAVKLKLVWEGNGTVDDDCVAQGNPPYWAILIEKGLADNIVVEYNEIHRNHRGGIFLGTNNVTIKNNFFHDTGYQGDKDLDGIPTFTDFTRYAINTEDNIGHNCKIVDNVFENTRMAVALRGEFNMVSGNEFRNCTYGVILYHLKHSIVRDNYFYFSSIGCYEYENLDRDWLIDNNIFVGGGINLTGSGVVASVSSNSFYGASFISTIHLLNCKSNTFNNATYMVEEPDTILDGCSFVNNSTIRIINKATELDNIIRCKFIDSFIYGQNSVKITVRDSYFKESSYIYSSGKMTYAFVNCKVNNKKTSLIKSNSPIDLGSVYHTLEVVGCSVSLGDNAILNSMSWGDLIIRNSDITFVLTKNLTKALVDFFGDVEGKIEIRDTAITAKNFTASQSINLAKEVVFANTKFTNFSLTDPSVEIQVGYILTAGTTTARPKVAPVGHMYFDTTLNKPIWRNATNNGWVDNTGTPVT
Physico‐chemical
properties
protein length:789 AA
molecular weight: 87718,79720 Da
isoelectric point:6,13466
aromaticity:0,11407
hydropathy:-0,23663

Domains

Domains [InterPro]
DC_0660
STR
13–789
DC_0660
IPR012334
STR
78–440
IPR012334 IPR006626 IPR006626 IPR006626
IPR006626
Unmapped
165–202
IPR006626 IPR006626 IPR011050
IPR006626
Unmapped
355–377
IPR006626 IPR006626
QFP93390.1
1 789
Architecture
STR
STR 13-789
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QFP93390.1
1 789
Domain Start End Length (AA) Confidence
N-terminal 1 69 69 0,9824
Central domain 70 731 663 0,9881
C-terminal 732 789 57 0,9597
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-69
Central
70-731
C-terminal
732-789

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp15
[NCBI] 		2608370 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QFP93390.1 [NCBI]
Genbank nucleotide accession
MN364664.1 [NCBI]
CDS location
range 102742 -> 105111
strand +
CDS
ATGCTCAGAAATCATATGTACACTGGTTCACCTGAACAAAAGTTGCGAGATATAGACTTGGAGTTAAGACAGACGGTAAAAAGAGTAAACGGGGTAGTACCTGATAGGTACGGCAACATTGAAATTGAGTTAGCAGGTGGAGGGTCAACGGGTAAGGCAAACGTATACGTGATAGAGACAGCGAAATGGGGAATATCTCCTGGTATACCTGCGAAGCCTTACAAAACTACAGATTACAATAGAGCGAACAACAATATAAAAGGAATTAATGATGCACTGGTATGGGCAAAAAACAACAACTACAACTATGTAGTTCTACCTTTCGGAAGCTACACTATTTGCTACCCTAACCCTGTTATTACGCAACCGAACATGGTAATTGATTTTGGATTCTCTACGTTAAAGGTAATATTCGATTCCGATGTCAGGTCTCCTTTTGACCTAACAGGTAAACCTATCTACGAGTTTAAAGGGGACTCTATTCTATGTACGACACCGAACACTAAGATAATTAACTTAACACTAGTTGGTGATAGGGTAGATAGAAGTTGGTCAAAAGAAGAAGAGAAAACTATGGAAAGTACAAATGGTATTAAATTTGGAGCAGGTGCTAATAACTGTCGTGTAAGCGGTTGCGACCTATCGTACTATATGGGGGATGCGATTGCTCTTTATTATAGTCCGTATACTTACTTCGATACAGGGGTTACTGAGTTCGGTACACTTAATAGTAATGGAGAACCAGTGGCAAGCGCTTCAAATAAAACAGTAAGGTCAACTAAGTTCTCACCTATACCTTCAGGGATTACTGCTTTTACTATGATAGGATTAGGTTATAGACCTGACACGTCTATTCCGTCAGGATCGTACGATGTGTATTTCTACGACAAAAACAACGTGTTTGTTTCGTTTAGAAAGAATATAAGAACTAGAGACCCTGTGCAGGTACCTAGTAAGGCAGTCAAGTTAAAATTGGTATGGGAGGGAAACGGTACAGTAGATGACGACTGTGTGGCACAAGGTAATCCCCCTTACTGGGCTATCCTTATTGAGAAAGGTCTAGCAGACAATATAGTTGTGGAGTACAACGAGATACACCGTAATCACCGTGGAGGTATATTCCTAGGTACAAATAACGTTACAATAAAAAATAACTTCTTCCACGACACAGGGTACCAAGGAGATAAGGACTTGGACGGAATACCGACATTCACTGATTTCACTAGGTACGCAATTAATACAGAGGATAACATAGGACACAACTGTAAGATTGTCGATAACGTTTTCGAGAACACTAGAATGGCAGTAGCACTACGTGGAGAGTTTAACATGGTAAGTGGTAACGAGTTTAGAAATTGCACATACGGTGTCATATTATACCACCTAAAACATAGCATTGTTCGGGATAACTACTTCTACTTTAGCTCTATCGGATGTTACGAGTACGAGAATCTTGACAGAGATTGGTTAATAGACAACAACATCTTTGTTGGAGGGGGTATTAACTTAACAGGTAGTGGAGTAGTAGCTTCTGTTTCTAGTAACTCTTTCTACGGAGCATCTTTTATCTCTACCATACACTTACTTAATTGTAAAAGTAACACGTTTAATAACGCAACATACATGGTAGAGGAACCTGATACTATTTTGGATGGGTGCTCGTTTGTAAACAATAGTACGATCCGAATTATTAATAAAGCAACTGAGTTAGACAACATCATTCGATGCAAGTTCATAGATTCTTTTATCTACGGTCAAAACTCTGTAAAAATAACGGTTAGAGATTCGTACTTTAAAGAATCAAGCTACATCTACTCTAGCGGTAAAATGACATACGCTTTTGTTAACTGTAAAGTAAATAACAAGAAGACAAGCCTAATAAAGAGCAATAGCCCTATCGACTTAGGGTCAGTATATCATACCTTGGAAGTCGTAGGATGCTCAGTTTCTCTAGGAGACAACGCTATCCTTAATTCGATGAGCTGGGGAGACCTAATTATCAGAAACTCAGACATAACGTTCGTACTAACTAAAAACTTGACGAAAGCTCTTGTAGACTTTTTCGGGGACGTAGAGGGGAAAATAGAAATACGAGATACAGCAATCACTGCAAAAAACTTTACGGCTAGTCAATCCATTAACCTAGCTAAAGAAGTAGTATTTGCTAACACAAAATTCACAAACTTCTCTCTAACTGATCCATCTGTGGAAATTCAGGTAGGGTATATTCTCACAGCAGGAACGACAACAGCTAGACCGAAAGTAGCACCAGTAGGTCACATGTACTTCGATACTACACTAAACAAACCGATTTGGCGGAACGCTACGAATAACGGTTGGGTAGATAACACAGGGACACCTGTAACGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
46daab58dcc110c22a5e72e8c52d572932e8dd25ac1a5929e057e68bd5341058
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3046
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a noval phage sp-15 Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-07-02 — GenBank