Protein

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Genbank accession
QPI17926.1 [GenBank]
Protein name
hinge connector of long tail fiber proximal connector
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MNNEYMAQFGPDSFVSNIVSEANAIKYRLIVRGSNTNSSNTRVHASLNGVDLINPNVDRGRGLCMIVLDGTTLSRIDYRSFDVYGFTETNSQAMKDFMTNQPSNRLVLIYSFDAIGSNQVLQDFMVSIGSTAWYSDFLNLSATSTDYRRSSYSAVYNSTMKKIVSENFVAGTVGNLVDSRSLVDIVFDEFSDIGVNGIPERIADDGTLYESNGNYSFHNYASHAIPSNKAKAGNIYRITAELMHDQTVGNLNGSCRLYTFIKNNQNWLGEKVLSTTGLAANQWHKLEAYYQIPIDTAANSFGVESYHFPSSITSQGKCSIRNVSVTQVSKIPSQRGSAMFGVNGIRLERMVEEKPTGTPIDRLLSIPVSESGQNSSKLIESSKFKEYETIFNESIEVAGSSGVSLWNTSRNELSGYGLKTGDTIRLTSEMSRDQTSITSGIHPWFAIGFYDAGGNHIVDTGLYGNTLNQANTFVQFNVDITIPVNATHIIYGYYRRGSGNGSVRFKNSRILGLRE
Physico‐chemical
properties
protein length:515 AA
molecular weight: 56853,65970 Da
isoelectric point:6,17694
aromaticity:0,10097
hydropathy:-0,30408

Domains

Domains [InterPro]
DC_0004
STR
1–514
DC_0004
PS52031
LEC
23–202
PS52031
IPR039477
STR
61–131
IPR039477
QPI17926.1
1 515
Architecture
STR
STR 1-514 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPI17926.1
1 515
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,2777
Central domain 187 385 200 0,4417
C-terminal 386 515 129 0,9581
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-385
C-terminal
386-515

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage POP12
[NCBI] 		2741065 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPI17926.1 [NCBI]
Genbank nucleotide accession
MT560058 [NCBI]
CDS location
range 89585 -> 91132
strand +
CDS
ATGAATAACGAATATATGGCCCAGTTCGGGCCTGATTCGTTTGTTTCTAATATTGTTTCGGAAGCAAACGCAATAAAATATCGTTTGATTGTAAGAGGTTCTAATACCAATTCATCTAATACAAGAGTACATGCAAGTTTAAACGGAGTTGATTTAATCAATCCGAATGTAGATAGAGGTAGAGGATTATGTATGATTGTTCTTGATGGAACCACTTTATCAAGAATTGATTATAGAAGTTTTGATGTTTATGGTTTTACTGAAACCAATTCACAAGCAATGAAAGACTTTATGACAAATCAACCATCAAATAGACTTGTTCTGATTTATTCTTTCGATGCAATAGGGTCTAATCAGGTTCTCCAAGATTTTATGGTATCGATAGGTTCTACTGCGTGGTATTCCGACTTTTTGAATTTAAGCGCAACATCAACCGATTATAGACGTTCTTCTTACAGTGCTGTGTATAATAGTACAATGAAGAAAATCGTATCTGAAAATTTTGTTGCTGGTACTGTAGGAAATCTTGTTGATTCTAGAAGTCTTGTTGATATTGTTTTTGATGAATTTTCTGATATTGGTGTTAACGGAATACCGGAAAGAATCGCAGACGATGGTACTTTATACGAAAGTAATGGTAATTATTCCTTTCATAACTACGCGTCTCATGCAATTCCTAGTAATAAGGCAAAAGCAGGAAATATCTATAGAATTACTGCTGAATTGATGCACGATCAAACAGTTGGTAATTTAAACGGCAGTTGTAGACTTTATACTTTCATCAAAAATAATCAGAATTGGTTGGGAGAAAAGGTTTTATCAACTACTGGTCTTGCTGCTAACCAATGGCATAAGTTAGAAGCATATTATCAAATACCTATTGATACTGCTGCTAATAGTTTTGGAGTTGAATCTTATCATTTTCCGTCGAGTATCACATCTCAAGGAAAATGCAGCATAAGAAACGTCTCCGTTACTCAGGTATCAAAAATCCCGTCTCAACGAGGTTCTGCGATGTTTGGCGTTAACGGAATACGGTTGGAAAGGATGGTAGAAGAAAAACCGACTGGGACGCCTATAGATAGGTTGCTGTCGATTCCTGTTTCAGAGTCTGGTCAAAATAGTAGTAAACTCATAGAATCGTCGAAATTTAAAGAATATGAGACTATTTTCAATGAATCGATAGAGGTTGCTGGCAGTTCTGGCGTTTCACTATGGAATACTAGCAGAAATGAACTTTCTGGATATGGATTGAAAACAGGCGATACAATTAGACTCACTTCCGAAATGTCGAGAGATCAGACAAGTATAACTAGCGGGATTCATCCTTGGTTTGCTATAGGATTTTATGACGCAGGAGGAAATCATATTGTCGATACAGGTTTATATGGAAATACATTGAATCAGGCAAATACTTTTGTTCAGTTTAATGTTGATATCACAATTCCTGTTAACGCAACTCATATCATATACGGATATTACAGAAGAGGATCAGGAAACGGTTCTGTTCGTTTTAAAAATTCAAGAATTTTAGGATTGCGTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f489f76e910862d66465ec7c30e222d375d1757af66425a0df0784f88522ed4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6607
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50