Protein

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Genbank accession
YP_010090872.1 [GenBank]
Protein name
baseplate wedge subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKQNLKIGNVVDDGTGDYLRAGGLKLNSNFDELYYQLGDGDVPHAAGAWKTHKTSDGADVAADFGKSYTLDTTAGRINFKLPKGSITDYNKVIRVRDVFNTWQRQPVSLIPATGDTIKGAATPKEIARNLADLELVYCAPGRWEYIDNKQVDKISNNDLATVVREDFVATEGQTDFLDVFSGYDYNIASLQVYHRGNLLFYAEKGKDFDKSIAEFGSPDTNPADIKALDGRNIRIKMACKAGDTVTVVSFMDGISQWRSSYNRREVRILDKNFTQKTTINGSIVVADLATKTSITVAELGIDTSSPINPRSLQVYLNSTLLYEAGTAGLPTFICEGYDHITDSASCATVNGNWKESYTDYLFTTDDATGIIEEFKFDRKFEDNDVLSIVWYNNDIGTTLDIDDITDVTNEMYVAIGSTLSITGAVNITDFDHPGWPNVEPAAASETKPSSVGSIFELVYPIGTIYENAVNPNNPATYMGFGQWKRWGEGKFLAGWSSDSSNAAFGLNNNDINASGDPSHTAGGTHGVESIYIKDVNVPKLKTDDKVLVSDANGNIVIGGCQFDPDDNGPAYTKYREDNATINKQFDPDAQAVATMPPYITVYRWLRIS
Physico‐chemical
properties
protein length:608 AA
molecular weight: 66712,20170 Da
isoelectric point:4,64678
aromaticity:0,10197
hydropathy:-0,37648

Domains

Domains [InterPro]
IPR036240
STR
1–236
IPR036240 IPR054430 IPR053827
IPR034695
Unmapped
1–608
IPR034695
DC_2238
STR
1–585
DC_2238
IPR008987
ATT
2–154
IPR008987 IPR056391
G3DSA:1.20.5.960
Unmapped
13–40
G3DSA:1.20.5.960
YP_010090872.1
1 608
Architecture
ATT
STR
ATT
STR
ATT
ATT 1-154 | STR 155-166 | ATT 167-268 | STR 269-453 | ATT 454-607 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010090872.1
1 608
Domain Start End Length (AA) Confidence
N-terminal 1 197 197 0,9281
Central domain 198 428 232 0,7555
C-terminal 429 608 179 0,9818
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-197
Central
198-428
C-terminal
429-608

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage EcS1
[NCBI] 		2083276 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Kagamiyamavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010090872.1 [NCBI]
Genbank nucleotide accession
NC_055721 [NCBI]
CDS location
range 91722 -> 93548
strand +
CDS
ATGAAACAAAATTTAAAAATAGGTAATGTCGTTGATGATGGTACTGGCGACTATCTTCGTGCTGGTGGTTTAAAATTAAATTCCAACTTTGACGAACTTTACTATCAATTAGGCGATGGCGATGTACCACATGCTGCTGGTGCCTGGAAAACTCATAAAACCTCAGATGGTGCTGATGTTGCTGCAGATTTTGGTAAATCCTACACATTAGATACAACTGCCGGTCGTATTAACTTTAAATTGCCTAAAGGCTCAATTACCGATTATAATAAAGTAATTCGTGTACGTGATGTATTCAATACTTGGCAACGTCAACCGGTTTCTTTGATTCCAGCTACAGGTGATACCATTAAAGGTGCTGCTACACCTAAAGAAATTGCTCGTAATTTAGCTGACCTTGAATTAGTTTATTGCGCACCAGGCCGTTGGGAATATATCGACAATAAACAAGTCGACAAAATTTCTAATAACGATTTAGCTACTGTTGTTCGTGAAGACTTTGTTGCTACTGAAGGTCAAACTGACTTCTTAGATGTCTTCTCTGGGTATGATTATAATATCGCAAGTCTTCAAGTTTATCATCGTGGTAACTTGCTGTTTTATGCTGAAAAAGGCAAAGACTTCGATAAATCAATTGCTGAATTTGGTTCTCCTGATACTAACCCAGCTGATATCAAAGCCTTAGATGGAAGAAATATCCGTATTAAAATGGCTTGTAAAGCAGGTGATACTGTTACAGTTGTGTCATTTATGGATGGTATTAGCCAATGGCGTTCATCTTATAATCGTCGTGAAGTTCGTATTTTAGATAAAAACTTTACTCAAAAAACTACTATTAATGGTTCAATTGTTGTTGCTGATTTAGCTACTAAAACAAGTATCACTGTTGCCGAATTAGGTATTGATACTTCATCACCAATAAATCCAAGATCGCTTCAAGTTTATTTGAATAGTACTTTGTTATATGAAGCTGGCACTGCTGGTTTACCTACATTTATTTGTGAAGGCTATGATCATATAACTGATAGTGCATCGTGTGCAACAGTAAATGGTAATTGGAAAGAATCTTATACTGATTATTTGTTTACCACAGATGATGCTACAGGTATTATTGAAGAATTTAAATTCGATAGAAAATTCGAAGATAATGACGTTCTTTCAATTGTTTGGTATAATAATGATATTGGAACTACATTAGATATTGATGATATCACTGATGTGACAAATGAAATGTATGTTGCAATTGGTAGCACACTTAGTATCACCGGTGCTGTTAATATTACAGATTTTGATCACCCAGGTTGGCCTAACGTAGAACCAGCAGCGGCATCCGAAACAAAACCTTCTTCTGTTGGCTCTATTTTTGAATTAGTTTATCCAATTGGAACAATTTACGAAAATGCAGTGAACCCAAACAACCCTGCTACATATATGGGATTTGGTCAATGGAAACGTTGGGGTGAAGGTAAGTTTTTAGCTGGTTGGTCATCTGATTCAAGCAATGCAGCATTTGGCTTAAATAACAATGACATTAATGCTTCTGGTGACCCTTCTCATACAGCAGGTGGTACCCACGGTGTTGAAAGCATTTATATTAAAGATGTTAACGTTCCTAAGCTTAAAACTGACGACAAAGTTTTAGTATCTGACGCTAATGGAAACATTGTTATTGGTGGGTGTCAATTTGACCCAGATGACAACGGTCCTGCTTATACTAAATATCGTGAAGATAATGCGACAATTAATAAGCAATTTGACCCAGATGCTCAAGCCGTTGCCACTATGCCGCCATATATCACCGTTTATCGCTGGTTAAGGATTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
940b1d3ea58d666ebf1533d0ea0b3333ac267616a2be952eb6ceef6bd9ef7895
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6002
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Full genome sequencing of a novel polyvalent bacteriophage as one of T4-Family member Kawasaki,T., Saad,A.M. and Yamada,T. 2018-07-28 — GenBank