Protein

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Genbank accession
AGC35436.1 [GenBank]
Protein name
minor structural protein
RBP type
TF
Evidence RBPdetect2
Probability 0,84
Protein sequence
MIHVLDFNDKIIDFLSTDDPSLVRAIHKRNVNDNSEMLELLISSERAEKFRERHRVIIRDSNKQWREFIINWVQDTMDGYTEIECIASYLADITTAKPYAPGKFEKKITSEALKDVLSDTGWEVSEQTEYDGLRTTSWTSYQTRYEVLKQLCTTYKMVLDFYIELSSNTVKGRYVVLKKKNSLFKGKEIEYGKDLVGLTRKIDMSEIKTALIAVGPENDKGKRLELVVTDDEAQSQFNLPTRYIWGIYEPQSDDQNMNETRLRSLAKTELNKRKSAVMSYEITSTDLEVTYPHEIISIGDTVRVKHRDFNPPLYVEAEVIAEEYNIISENSTYTFGQPKEFKESELREEFNKRLNIIHQKLNDNISNINTIVKDVVDSELEYFERKIHKSDTPPENPVNDMLWYDTSNPDVAVLRRYWNGRWIEETPNDVEKLGGIIREKALFSELNNIFINLSIQHASLLSEATELLNSEYLVDNDLKADLQASLDAVIDVYNQIKNNLESMTPETATIGRLVDTKTLFLEYRKKLQDVYTDVEDVKIAISDRFKLLQSQYTDEKYKEALEIIATKFGLTVNEDLQLVGEPNVVKSAIEAARESTKEQLRDYVKTSDYKTDKDGIVERLDTAEAERTTLKGEIKDKVTLNEYRNGLEEQKQYTDDQLSDLSNNPEIKASIEQANQEAQEALKSYIDAQDDLKEKESQAYADGKISEEEQRAIQDAQAKLEEAKQNAELKARNAEKKANAYTDNKVKESTDAQRKTLTRYGSQIIQNGKEIKLRTTKEEFNASKRTLSRVLADITVNAMKGIYLRYDENGAITSHTIDKDGVKISGDKVDITANREFNVVANNINNKVGKNDIVNSLNLSNEGLDINVNRIGIKGGNANRYVQVQNDFIELGGIVQRTWKGKRSTDDIFTRLKDGHLRFRNNTAGGSLYMSHFGISTYIDGEGEDGGSSGTIQWWDKTYSDSGMNGITINSYGGVVALTSDYNRIIIDSYASANIESREAPIYLSPNTKNKPGLNRFAFTLSNADSAYETDGYIMFGSDENYKYGAGLRFSKRSNKGLVQVVNGDYATGGDTTIESGMGKFNLVKRRDGNSYVSIQSYDLLAVGSDNAGDRVASNSIYKRTYSAPANLHITSAGTIGRATSAKKYKISIENQYINEDDQFSHSKEILKLPIRTWFDKYESEIMAKELESGKKLSDDTFKLSRHTGLIAEEVEELGFNEFVIYDDNGEIEGIAYDRLWVHLIPIIKNQQSKIEKLEELINE
Physico‐chemical
properties
protein length:1260 AA
molecular weight: 143324,27680 Da
isoelectric point:5,08632
aromaticity:0,08333
hydropathy:-0,65683

Domains

Domains [InterPro]
DC_1956
STR
1–577
DC_1956 DC_0536
IPR007119
Unmapped
25–336
IPR007119 Coil Coil IPR030392
IPR010572
ENZ
94–332
IPR010572
AGC35436.1
1 1260
Architecture
STR
STR
STR 1-577 | STR 634-1260
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage JS01
[NCBI] 		1273712 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGC35436.1 [NCBI]
Genbank nucleotide accession
KC342645 [NCBI]
CDS location
range 12 -> 3794
strand +
CDS
GTGATACATGTTTTAGATTTTAACGACAAGATTATAGATTTCCTTTCTACTGATGACCCTTCCTTAGTTAGAGCGATTCATAAACGTAATGTTAATGACAATTCAGAAATGCTTGAACTGCTCATATCATCAGAAAGAGCTGAAAAGTTCCGTGAACGACATCGTGTTATTATAAGGGATTCAAACAAACAATGGCGTGAATTTATTATTAACTGGGTTCAAGATACGATGGACGGCTACACAGAGATAGAATGTATAGCGTCTTATCTTGCTGATATAACAACAGCTAAACCGTATGCACCAGGCAAATTTGAGAAAAAGATAACTTCAGAAGCATTGAAAGATGTGTTGAGTGATACAGGTTGGGAAGTTTCTGAACAAACCGAATACGATGGCTTACGTACTACGTCATGGACTTCTTATCAAACTAGATATGAAGTTTTAAAGCAATTATGTACAACCTATAAAATGGTATTGGATTTTTATATAGAGCTTAGTTCTAATACCGTCAAAGGTAGATATGTGGTACTCAAAAAGAAAAACAGCTTATTCAAAGGTAAAGAAATTGAGTATGGTAAAGATTTGGTTGGGTTAACTAGGAAGATTGATATGTCAGAAATCAAAACAGCATTAATTGCTGTGGGACCCGAAAACGACAAAGGAAAGCGTTTAGAGTTAGTTGTGACAGATGACGAAGCACAAAGTCAATTCAACTTACCTACCCGTTATATTTGGGGAATATACGAACCTCAATCAGATGATCAAAATATGAATGAAACACGGTTGCGTTCTTTAGCCAAAACAGAGTTAAATAAACGTAAGTCGGCAGTTATGTCATATGAGATTACTTCTACTGATTTGGAAGTTACGTATCCGCACGAGATTATATCAATTGGTGATACAGTCAGAGTAAAACATAGAGATTTTAACCCGCCATTGTATGTAGAGGCAGAAGTTATTGCCGAAGAATATAACATAATTTCAGAAAATAGCACATATACATTCGGTCAACCTAAAGAGTTCAAAGAATCAGAATTACGAGAAGAGTTTAACAAGCGATTGAACATAATACATCAAAAGTTAAACGATAATATTAGCAATATCAACACTATAGTAAAAGATGTTGTAGATAGTGAATTAGAATACTTTGAACGCAAAATACACAAAAGTGATACACCGCCAGAAAATCCAGTCAATGATATGCTTTGGTATGATACAAGTAACCCTGATGTTGCTGTCTTGCGTAGATATTGGAATGGTCGATGGATTGAAGAAACACCAAATGATGTTGAAAAATTAGGTGGTATAATAAGAGAGAAAGCGCTATTCAGTGAATTAAACAATATATTTATTAATTTATCTATACAACACGCTAGTCTTTTGTCAGAAGCTACAGAATTACTGAATAGCGAGTACTTAGTAGATAATGATTTGAAAGCGGACTTACAAGCAAGTTTAGACGCTGTGATTGATGTTTATAATCAAATTAAAAATAATTTAGAATCTATGACACCCGAAACTGCAACGATTGGTCGGTTGGTAGATACAAAAACTTTATTTCTTGAGTATAGAAAGAAATTACAAGATGTTTATACAGATGTAGAAGATGTCAAAATCGCCATTTCAGATAGATTTAAATTATTACAGTCACAATACACTGATGAAAAATATAAAGAAGCGTTGGAAATAATAGCAACAAAATTTGGTTTAACGGTGAATGAAGATTTGCAGTTAGTCGGAGAACCTAATGTTGTTAAATCAGCTATTGAAGCAGCTAGAGAATCCACAAAAGAACAATTACGTGACTATGTAAAAACATCGGACTATAAAACAGACAAAGACGGTATTGTTGAACGTTTAGATACTGCTGAAGCTGAGAGAACGACTTTAAAAGGTGAAATCAAAGATAAAGTTACGTTAAACGAATATCGAAACGGATTGGAAGAACAAAAACAATATACTGATGACCAGTTAAGTGATTTGTCCAATAATCCTGAGATTAAAGCAAGTATTGAACAAGCAAATCAAGAAGCGCAAGAAGCTTTAAAATCATACATTGATGCTCAAGATGATCTTAAAGAGAAGGAATCGCAAGCGTATGCTGATGGTAAAATTTCGGAAGAAGAGCAACGCGCTATACAAGATGCTCAAGCTAAACTTGAAGAGGCAAAACAAAACGCAGAACTAAAGGCTAGAAACGCTGAAAAGAAAGCTAATGCTTATACAGACAACAAGGTCAAAGAAAGCACAGATGCACAGAGGAAAACATTGACTCGCTATGGTTCTCAAATTATACAAAATGGTAAGGAAATCAAATTAAGAACTACAAAAGAAGAGTTTAATGCTTCTAAAAGAACACTATCAAGAGTGTTAGCAGACATCACTGTAAATGCTATGAAAGGCATCTATTTAAGGTATGACGAAAATGGGGCGATTACTTCACATACTATTGATAAAGATGGCGTGAAAATTAGTGGCGATAAAGTTGATATAACAGCGAATAGAGAATTTAATGTAGTCGCAAATAATATTAATAACAAAGTTGGTAAAAATGACATTGTTAATAGCCTAAACTTATCAAATGAAGGTCTTGACATCAATGTGAATAGAATTGGTATTAAAGGCGGAAATGCTAACCGTTATGTACAAGTTCAAAATGATTTTATTGAACTTGGCGGAATCGTACAACGAACTTGGAAAGGCAAACGATCAACCGATGATATATTCACACGTCTTAAAGATGGACATCTAAGGTTTAGAAATAATACCGCAGGCGGTTCACTTTATATGTCACATTTTGGTATTTCAACATATATTGATGGAGAAGGCGAAGACGGAGGTTCATCCGGTACTATTCAATGGTGGGATAAAACTTACAGTGATAGCGGTATGAATGGCATAACAATCAATTCTTATGGCGGTGTAGTCGCTTTAACATCTGACTACAACCGAATTATTATCGATTCATATGCTTCAGCTAATATTGAAAGTAGAGAAGCACCGATATATTTATCTCCGAACACCAAAAATAAACCTGGTTTAAACCGATTCGCATTCACATTATCAAACGCTGATAGTGCATACGAAACTGACGGTTATATCATGTTTGGTTCAGATGAAAACTATAAGTACGGTGCTGGATTAAGATTTTCTAAACGTAGCAATAAAGGATTGGTTCAAGTCGTTAATGGTGACTATGCTACAGGCGGAGACACTACAATTGAGTCAGGTATGGGCAAATTCAACTTAGTTAAACGAAGAGATGGAAATAGTTACGTTAGCATTCAAAGTTATGATTTATTGGCGGTAGGTTCTGATAATGCTGGCGATAGAGTCGCTTCTAATTCTATTTATAAGCGTACTTATTCAGCACCTGCTAACTTACACATTACTTCTGCTGGAACAATTGGGCGTGCTACTTCTGCCAAAAAGTATAAAATTTCAATCGAAAATCAATATATCAATGAAGACGATCAGTTCAGTCATTCAAAAGAGATTTTAAAGCTTCCAATTCGTACATGGTTTGACAAATATGAATCGGAAATAATGGCTAAAGAATTGGAAAGTGGTAAAAAGTTATCTGATGATACTTTTAAACTTAGTCGACATACTGGCTTAATAGCGGAAGAGGTTGAAGAATTAGGATTTAATGAATTTGTTATTTATGATGACAACGGAGAAATCGAAGGTATCGCATACGATAGACTTTGGGTTCATTTAATACCTATTATTAAAAACCAGCAATCAAAAATCGAAAAACTGGAGGAATTAATAAATGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
de5b4f94144d256ce6d6b7b553497ac4a5adf1c95dea3003be4eb3fc4ebe9353
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3230
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Staphylococcus aureus Siphovirus Phage JS01 Jia,H., Bai,Q., Yang,Y. and Yao,H. 2013 24233583 GenBank