Protein

View in Explore
Genbank accession
ADI55479.1 [GenBank]
Protein name
gp12 short tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSTNTLKHISDKSEFKTFDPTGSNFDPSITNVQDALASISAIGVTGNIPSASETEQGIIRLATQQEVIDGTDTFSAVTPATLKGRLDIPTQATETYVGITRYATNDEAIAGTETQAAIVASSLKATIDYTFTNRLATENTTGVLKISTLPAALAGTDDTTAMTPLKTAQAIGAATSALPTYASATQTVEGIVRIATNAEVANGTLTNGVAISPSGLKSLTSTQGRAGIIRLATPQEASAGSDSNIALSPSTLLSRTGTTGRLGVVKLSTTVGSGDGNTALAYNANVISTTGGTINGTLNVNGNLRRNGRDVVTIDQLKDSVPIGTIVMWGGQINNIPAGWAVCDGGNSGEQGFRNVVGSKWGSTGARPDFRGLYPRGANQTNDGGLREWDANVRIRDAKGNDAKGKPRLGVGCGSYGHGTVQAQQLRFHKHAGGFGEHDNAGAFGNTVRSNFAGTRKGLDWDNRSYFTNEGYEIDGSGSRDSRTTLNSEGLIGNENRPWTMSILFIIKVA
Physico‐chemical
properties
protein length:510 AA
molecular weight: 53084,10740 Da
isoelectric point:6,55344
aromaticity:0,05490
hydropathy:-0,29471

Domains

Domains [InterPro]
DC_0176
STR
1–422
DC_0176
G3DSA:2.10.280.10
Unmapped
249–285
G3DSA:2.10.280.10 IPR037053 IPR044916
SSF69349
STR
249–333
SSF69349 IPR027448
IPR015173
STR
250–308
IPR015173 SSF88874
ADI55479.1
1 510
Architecture
STR
ATT
STR
STR 1-309 | ATT 310-371 | STR 372-509 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage IME08
[NCBI] 		698728 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ADI55479.1 [NCBI]
Genbank nucleotide accession
HM071924.1 [NCBI]
CDS location
range 87527 -> 89059
strand +
CDS
ATGTCTACAAATACACTAAAACACATAAGTGATAAATCAGAATTTAAAACATTCGACCCTACCGGGTCGAATTTTGACCCCTCTATTACTAATGTCCAAGACGCATTGGCGTCTATTTCCGCTATAGGTGTTACAGGTAATATACCTTCGGCTTCTGAAACAGAACAGGGTATTATTAGATTAGCGACCCAACAAGAAGTTATTGATGGTACTGATACTTTCTCTGCGGTAACTCCGGCCACTTTAAAAGGTCGTTTAGATATTCCTACTCAAGCAACAGAAACTTATGTAGGCATCACCCGTTATGCCACTAATGATGAAGCCATTGCTGGAACAGAAACCCAGGCTGCAATCGTAGCATCGTCTTTGAAAGCTACTATAGATTATACATTCACCAATCGTTTAGCCACAGAGAACACTACAGGCGTACTCAAGATTTCAACCCTGCCGGCTGCTCTAGCAGGTACAGATGATACAACAGCAATGACGCCTCTGAAAACTGCTCAGGCAATTGGTGCGGCTACATCGGCATTACCGACTTATGCCAGCGCTACCCAAACTGTTGAAGGTATTGTTAGAATCGCAACAAATGCCGAAGTGGCAAATGGTACATTGACCAATGGTGTGGCAATTTCTCCTTCCGGGTTAAAATCTTTAACTTCTACCCAAGGGCGAGCAGGTATTATTAGATTAGCCACCCCGCAAGAAGCTTCTGCCGGCAGCGATTCTAATATAGCTTTATCTCCTTCAACTCTTCTTTCTCGTACTGGTACTACTGGAAGGTTGGGTGTTGTTAAATTATCGACTACGGTTGGTTCTGGTGATGGGAATACGGCATTGGCATATAATGCTAACGTTATTTCTACCACAGGCGGCACCATTAACGGTACTTTAAACGTTAATGGTAATTTGCGTCGCAATGGGCGTGATGTTGTTACTATCGACCAATTAAAAGATTCTGTCCCTATCGGTACTATTGTTATGTGGGGAGGCCAGATTAATAATATCCCTGCAGGTTGGGCTGTTTGTGATGGTGGTAACTCTGGTGAACAAGGATTCCGAAATGTAGTTGGTAGTAAATGGGGTTCAACTGGTGCTCGTCCCGACTTCCGTGGATTATATCCGCGTGGAGCAAACCAGACTAATGACGGCGGATTAAGAGAATGGGATGCCAACGTTAGAATTAGAGATGCCAAAGGTAATGATGCCAAAGGTAAACCAAGATTAGGCGTAGGCTGTGGTTCATATGGCCATGGTACAGTACAAGCCCAGCAACTTCGTTTCCATAAACACGCTGGCGGCTTTGGTGAACACGACAATGCGGGTGCATTTGGTAATACCGTTCGTTCTAACTTTGCTGGTACTCGTAAAGGACTGGACTGGGATAACCGTTCTTACTTTACAAACGAAGGATACGAAATTGATGGTTCAGGTTCACGAGATTCAAGAACTACCCTAAACAGTGAAGGGTTAATTGGTAACGAAAACCGTCCTTGGACTATGTCCATCCTATTCATTATTAAAGTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8fa604019f3e7f59ddd3ae8a24a27e228f0b4d03263397a499e0d418ae76b576
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6672
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence characteristics of T4-like bacteriophage IME08 benome termini revealed by high throughput sequencing Jiang,X., Jiang,H., Li,C., Wang,S., Mi,Z., An,X., Chen,J. and Tong,Y. 2011 21524290 GenBank
The complete genome sequence of a novel T4-like bacteriophage, IME08 Jiang,H., Jiang,X., Wang,S., Li,C., Chen,B., An,X., Mi,Z., Chen,J. and Tong,Y. 2011 21614434 GenBank