Protein

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Genbank accession
WHS68420.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,57
Protein sequence
MALISQTVKNLKGGISQQPNILRYPEQAEAQINAFSSETEGLQKRSPTVFTKIISGRAGDFGSKPLVHIINRDTVEQYQVVFTGTGVRVFGLDGKEYSVTGDMQYVQVSDPQKMLRCVTVADYTFIVNRTWTVQANGTTTDPGFRTDGDCIINVRGGQFGRTLKIHINGGTQATLTLPDGSNASQTPQTDAQYIAEQLAAQLVTNLSPSGWNFAVGPGYIHILAPANDNIRTVTTEDGYANQLINAVTHEAQSFTKLPLEAPNGYKVKISATNNGTGDKYYVQYDALNKVWRETVGWGVKLGLDARTMPWALVRQADGSFQMTQLGYANRTCGDDDTNPMPSLVGQTINDVFFFRNRLGFLSGENIVMSRTAKYFNFFPPSVANLSDDDPIDVAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSSGVLTPKSIQLDLTTEFDVDDTARPYGVGRGVYFAAPRASFTSIKRYYAVQDVSAVKDAEDISAHVPSYIPNGVFSIHGSGTENFACVLTTGAPNKLFMYKYLFIEGELRQQSWSHWEFSEGTKIRAAQCIGSTMYLILENDQIFMARIHFTKNTVDFSDEPYRIYMDRKIRYVIPKGTYNDDTYQTTFNLSNVYGGLGFWKDKVSCVFLDGQVEEFTPPNGVSWEGNQPIIRLNGNREGEVVFLGANYEFYYEFSKFLIKKTAEDGSTATEDIGRLQLRRAWVNYEDSGAFLIQVENTSRLFEYMMAGGRLGSDSLRVGYLNVGTGQFRFPVVGNAQLNAVRLISDNTTPLNVIGCGWEGNYNRRSSGI
Physico‐chemical
properties
protein length:796 AA
molecular weight: 88474,28730 Da
isoelectric point:5,59122
aromaticity:0,11432
hydropathy:-0,28141

Domains

Domains [InterPro]
IPR058003
TTP
1–796
IPR058003
WHS68420.1
1 796
Architecture
TTP
TTP 1-796
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WHS68420.1
1 796
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9935
Central domain 142 345 205 0,0981
C-terminal 346 796 450 0,1401
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-345
C-terminal
346-796

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage W2B
[NCBI] 		3049138 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ningirsuvirus
Host Dickeya solani
[NCBI] 		1089444 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WHS68420.1 [NCBI]
Genbank nucleotide accession
OQ871563 [NCBI]
CDS location
range 12121 -> 14511
strand -
CDS
GTGGCTCTTATTTCTCAAACAGTTAAAAACCTGAAAGGCGGTATTAGCCAACAGCCGAATATCTTACGTTACCCTGAGCAGGCCGAAGCGCAAATCAATGCGTTCTCCTCTGAGACTGAAGGTCTCCAGAAGCGGTCTCCTACAGTGTTCACGAAGATTATCTCTGGACGTGCTGGAGACTTCGGGAGTAAACCTCTGGTCCATATCATCAACCGCGACACAGTGGAGCAGTATCAGGTGGTCTTCACCGGGACAGGCGTTCGTGTGTTCGGTCTGGACGGCAAAGAGTATTCAGTAACAGGGGACATGCAGTATGTCCAAGTGTCCGACCCTCAGAAGATGCTGCGCTGTGTCACTGTGGCTGACTATACGTTCATCGTTAACAGAACATGGACGGTGCAGGCTAATGGCACAACGACAGACCCCGGATTCAGGACTGATGGTGACTGTATCATCAACGTCCGTGGCGGTCAGTTCGGGCGAACCCTTAAGATTCACATCAACGGAGGCACACAGGCCACCTTGACGTTACCTGATGGTTCAAACGCCAGCCAGACTCCGCAGACGGATGCTCAGTACATAGCTGAACAATTGGCGGCACAGCTTGTCACTAACTTAAGCCCTTCGGGTTGGAACTTTGCGGTCGGTCCGGGGTACATCCATATCTTGGCCCCTGCCAATGACAACATCCGTACAGTGACCACTGAGGATGGCTATGCGAACCAGTTGATTAATGCTGTGACCCATGAGGCACAGAGTTTCACTAAGTTACCTCTGGAGGCCCCTAATGGCTACAAGGTGAAAATCTCTGCGACCAACAACGGGACCGGCGATAAGTATTACGTCCAGTATGACGCTTTGAATAAGGTCTGGCGTGAGACTGTAGGCTGGGGCGTTAAGCTGGGACTCGATGCTCGTACCATGCCTTGGGCCTTGGTGCGTCAGGCTGACGGCTCCTTCCAGATGACTCAGTTGGGATACGCTAACCGCACCTGTGGTGATGATGACACCAACCCAATGCCGTCCCTCGTGGGCCAGACGATTAACGATGTGTTCTTCTTCAGGAACCGTTTAGGCTTCCTCAGTGGAGAGAACATTGTGATGAGTCGTACCGCGAAATACTTCAACTTCTTCCCGCCTTCAGTGGCGAACCTGAGTGATGATGACCCGATTGATGTTGCTGTATCGCACAACCGAATCTCCATCCTGAAGTATGCCGTACCGTTCTCTGAGCAATTGCTCTTATGGTCGGACCAAGCGCAGTTCGTTCTGTCGTCTTCCGGTGTCCTTACTCCGAAGTCTATCCAGTTGGACCTGACGACTGAGTTCGATGTGGATGACACAGCGAGGCCTTATGGTGTGGGTCGTGGTGTTTACTTCGCGGCTCCTCGTGCCTCCTTTACGTCCATTAAGCGTTACTATGCGGTTCAGGATGTGAGTGCTGTTAAGGACGCTGAAGATATCTCTGCTCACGTTCCAAGTTACATCCCTAATGGCGTGTTCAGTATCCACGGCTCAGGTACAGAGAACTTTGCATGTGTACTCACCACTGGTGCTCCTAACAAGTTATTCATGTACAAATACTTGTTCATTGAAGGCGAGTTGAGGCAACAGTCATGGTCTCATTGGGAGTTCTCAGAGGGAACCAAGATTCGAGCGGCTCAGTGTATCGGATCCACGATGTATCTGATTCTGGAGAACGACCAGATTTTCATGGCCCGCATCCACTTCACGAAGAACACTGTGGACTTCTCGGATGAGCCTTATCGTATCTACATGGACCGTAAGATTCGCTACGTGATTCCTAAAGGCACCTACAACGATGACACCTATCAGACGACCTTCAACCTCTCCAACGTGTACGGTGGGTTAGGCTTCTGGAAGGATAAAGTCTCCTGTGTGTTCCTTGATGGTCAGGTAGAGGAGTTCACGCCACCGAACGGTGTGTCGTGGGAAGGTAACCAACCGATTATCCGACTCAACGGTAACCGTGAGGGCGAGGTGGTGTTCCTCGGTGCGAACTATGAGTTCTACTACGAGTTCTCCAAGTTCCTCATCAAGAAGACTGCGGAGGATGGCTCAACGGCCACTGAGGATATCGGTCGGTTGCAGCTTCGTCGTGCGTGGGTCAACTATGAGGACTCTGGTGCGTTCCTTATCCAAGTGGAGAATACCTCTCGACTCTTTGAGTACATGATGGCTGGTGGTCGCTTAGGCTCCGACAGTCTCCGTGTGGGTTACCTCAACGTGGGTACAGGACAGTTCCGATTCCCGGTAGTGGGCAACGCTCAGTTGAACGCAGTGCGCCTCATCTCAGACAACACGACCCCACTCAACGTGATTGGTTGTGGCTGGGAGGGTAACTACAATCGCCGCTCAAGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b226a46f15d1382b1770092e5930fe34ff6f79a3b626053e297fd639b56bba04
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2981
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50