Protein

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Genbank accession
BCD83111.1 [GenBank]
Protein name
phage tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,82
Protein sequence
MTQLPTLTVFNGQVPDKTTMDKDTFANSVHIYLNYFNDSFVPETNTLVNNMNTLSGEVQTAANNAEASAQNAATSEANAANSELKAYKWAEEAEDVEVETGKYSAKHWAIKAQAAVATLPEGTIDDLLVATDKTWSSQKISDEFFARGEVAKPSIIVPADGAIDFSGTIESSAFATKENFIGTQDFVEWQLATDSGFTTLVDSYAGSSNLTSWTPNYGSNPSTTMYVRVRHGSDNHISEWSDVVSFMTPANTAPTINSVTWSNSTIYDNNTYDVTIDATDPDGDVLTYSVTADDANVTITQDATIPNVFHVTFPDYTADTIVNFTYTVDDGNGGSDSLTEGVTVTNNYNIMATIDSGDNDYLYDISTDANGNVFVCGWVTSGNQYDCYIAKLDNKLNLLSQYTIDSGTGSDMVTGISVDANGNVFVCGYSNDGTTYNYYIAKFDNDLNLISQYTIDSGDSDYLYSISTDANGNVFVCGYSSTATTSVCYIAKFDNDLNLISQYTIDSGNADYGRWISVDANGNVFVCGYSNDGTTYNHYIAKLDNDLNLISQYTIDGGNDDYSFRMSIDGNGNVFVCGHSYDGTTYNAYIAKFDNDLNLISQYTIDSGTGTDTFISIDINSNGNVFVAGYSDDGTTYNAYIVKFDNDLNLISQYTIDSGDADYLYGISTDANGNVFVCGKSNDGTTYNHYVSKFINDLNIPSGTYSITVGSITFTLTDVAFTPTAQTWTPTAQTWSPTAQTWSPTAQTWSPTAQTWTVSTGTF
Physico‐chemical
properties
protein length:763 AA
molecular weight: 82810,50950 Da
isoelectric point:4,05003
aromaticity:0,12189
hydropathy:-0,29987

Domains

Domains [InterPro]
DC_0765
STR
48–253
DC_0765 DC_0902 PTHR42754
SSF101898
RBD
356–633
SSF101898 DC_0902
cd05819
RBD
414–694
cd05819
DC_0902
ATT
449–551
DC_0902
IPR010620
Unmapped
451–481
IPR010620 IPR011042
DC_0902
ATT
534–646
DC_0902
BCD83111.1
1 763
Architecture
STR
ATT
STR
STR 48-253 | ATT 336-732 | STR 733-754 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BCD83111.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 345 345 0,8630
Central domain 346 752 408 0,6333
C-terminal 753 763 10 0,3306
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-345
Central
346-752
C-terminal
753-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Nitratiruptor phage NrS-2
[NCBI] 		2725864 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Nitratiruptor sp. YY08-10
[NCBI] 		2724897 Campylobacterota > Epsilonproteobacteria > Nautiliales > Nitratiruptoraceae > Nitratiruptor >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BCD83111.1 [NCBI]
Genbank nucleotide accession
LC545443.1 [NCBI]
CDS location
range 35819 -> 38110
strand +
CDS
ATGACACAATTGCCGACACTGACCGTGTTTAACGGGCAGGTACCAGACAAAACAACGATGGATAAGGACACGTTCGCAAATAGTGTTCATATCTATCTCAACTATTTCAACGACAGCTTCGTGCCTGAGACAAACACACTTGTAAACAACATGAATACATTAAGTGGAGAAGTTCAAACAGCCGCAAACAATGCGGAAGCAAGCGCGCAAAATGCCGCAACGAGCGAGGCGAATGCTGCTAACAGTGAGCTAAAAGCGTACAAATGGGCTGAAGAAGCTGAAGATGTAGAAGTTGAAACGGGAAAATATAGCGCAAAGCACTGGGCAATAAAAGCCCAAGCAGCGGTTGCAACACTACCTGAAGGGACGATCGACGATCTACTTGTAGCTACTGATAAAACATGGAGCTCACAAAAGATTAGCGACGAGTTTTTTGCAAGAGGTGAAGTAGCGAAACCATCAATAATAGTTCCAGCGGATGGTGCAATAGACTTCAGCGGAACAATAGAATCGTCGGCTTTTGCCACAAAAGAAAACTTCATTGGAACTCAAGACTTTGTTGAATGGCAACTTGCAACAGATAGTGGATTTACAACTTTGGTTGACAGTTACGCCGGATCGTCAAATCTCACATCATGGACTCCGAACTATGGAAGCAACCCATCGACCACAATGTATGTAAGAGTTAGGCATGGCAGTGACAATCATATTTCAGAATGGAGCGATGTAGTTAGCTTCATGACACCAGCAAATACTGCGCCAACGATAAATTCAGTCACATGGTCAAACAGTACCATATACGACAACAATACATACGATGTGACTATTGATGCAACAGACCCAGATGGTGATGTGCTGACATACAGCGTTACAGCGGATGACGCTAATGTGACGATTACTCAAGATGCAACTATCCCGAATGTTTTTCATGTAACTTTTCCAGATTACACAGCAGACACAATAGTAAATTTTACATACACGGTGGATGATGGAAATGGTGGTTCTGACAGTCTCACAGAAGGAGTAACTGTTACAAATAATTACAATATTATGGCAACGATTGATAGTGGAGATAATGATTATTTGTATGATATATCTACAGATGCAAATGGAAACGTGTTTGTATGTGGATGGGTTACATCTGGAAATCAGTATGATTGTTATATAGCAAAATTGGACAACAAACTAAATCTATTATCTCAATATACAATAGATAGTGGCACAGGCAGTGATATGGTCACAGGTATTTCAGTGGATGCAAACGGAAATGTATTTGTGTGCGGATATAGTAATGATGGAACTACGTACAACTACTATATAGCAAAGTTTGACAATGACTTAAACTTGATATCTCAATATACGATTGATAGTGGAGATAGTGATTATTTGTATAGTATATCTACAGATGCAAATGGAAATGTGTTTGTGTGTGGATATAGCAGTACTGCAACCACTTCTGTTTGCTATATAGCAAAGTTTGACAATGATTTGAACCTGATATCGCAATATACGATTGATAGTGGAAACGCTGATTATGGCAGGTGGATTTCAGTAGATGCAAATGGAAACGTGTTTGTATGTGGATATAGCAATGATGGGACTACATACAACCACTACATAGCAAAGCTCGATAATGATTTAAATTTGATATCGCAATATACAATAGATGGTGGAAATGATGATTATTCATTCCGAATGTCTATTGACGGCAATGGAAATGTATTTGTATGCGGACATAGCTACGATGGAACTACATATAATGCTTACATAGCAAAGTTTGACAATGATTTGAACCTGATATCGCAATATACGATTGATAGTGGTACTGGTACTGATACTTTTATTTCAATTGATATAAATTCAAACGGAAACGTGTTTGTTGCTGGGTACAGTGACGATGGGACTACATATAATGCTTACATAGTAAAGTTCGATAATGATCTAAACCTGATATCGCAATATACAATAGATAGTGGAGATGCCGATTATTTATATGGTATATCTACAGATGCAAATGGAAATGTGTTTGTATGTGGTAAATCAAATGATGGAACTACATATAATCATTATGTTTCAAAGTTTATTAATGATCTAAATATCCCTTCTGGAACATACTCGATAACTGTTGGATCGATAACTTTTACATTAACTGATGTTGCCTTCACACCTACTGCACAAACTTGGACACCTACTGCTCAAACATGGTCGCCTACTGCTCAAACATGGTCGCCTACTGCTCAAACATGGTCGCCTACTGCTCAAACATGGACAGTATCAACGGGAACATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dbeb266e3a521db1b1ec3f3d74795f5fa7b641ccc043c46f29717950504b5ed4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8099
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic insights into the co-evolution between the temperate phages and deep-sea chemolithoautotrophic Epsilonbacteraeota, Nitratiruptor Yoshida-Takashima,Y., Takaki,Y., Yoshida,M., Nunoura,T. and Takai,K. 2022-11-01 — GenBank