Protein

View in Explore
Genbank accession
YAF80398.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,69
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MYNGSTFKWHKRLKAMIKNMITGSKGGSSKPHTPVEMEDNLISINRIRILLAVSDGEVDPDFSLKDLYFDDVPVMNQDGSLNFQNVKAEFRPGTQTQDYIQGFTDTASEITVARDLTAATPYIISVTNKNLSAIRIKILMPRGVTQEDNGDLTGVRVEYAVDMAVDGAEYKEVLHDVIEGKTMSGYDRSRRIDLPVFNDRVLLRVRRLTDSTSARVTDLIKMQSYAEVVDAKFRYPLTGLVYVEFDSELFPNALPNISIKKKWKIINVPSNYDPISRTYSGSWDGTWKKAWSNNPAFVLYDLITNQRYGLDQRELGIALDKWSIYECAQYCDQMVPDGKGGTEPRYLCDVVIQSQVEAYQLVRDICSIFRGMSFWNGESLSIVIDKPRDASYIFTNDNVVNGEFTYTFASEKSMYTQCNVTFDDEQNMYQQDVEGVFETEAALRFGYNSTSITAIGCTRRSEANRRGRWILKTNVKSTTVNFATGLEGMIPTVGDVIVVSDNFWSSALTLNLSGRVMEVSGLQVFTPFKVDARAGDRILVNKPDGKPVGRTIARVSDDGKTLTLNTTFGFDVQPDTIFAIERTDIAQQRYVVTGITKGDGDEEFTYNITAVEYDPNKYDEIDYGVNIDDRPTSIVQPDILPAPQNVKIESYSRVVQGASVETMHVSWDKVEYASLYEMQWRKDNGNWNNTPRTANKETEVEGIYAGNYHVRVRSVAANGSASGWSAIVSAGLTGKVGEPERPINLTASDNEVFGIRVKWGMPEGSGDTAYIELHQAPNGSDGHPIVDEATLLTLIPFPQYEYWHSILPAGHVVWYKARAVDKIGNVSDWTDFVRGMASTDTSIITDHIKVDIENSEGYKWLEENAIKSNDKIHSAAESIIQNALANDTDVRRMRVENGKRKAEFLQSLKLIADETEARVTAITQLNAQFDEKLTAQNSELREVIANSTETLSQQINQLTATFESEIDGVKQDIKAQITDVNQAITNEAEARASADRALSTQIGDTQSAVNQKLDSWVNADSVGAMYGVKLGIRYNGQEYSAGMALSLVADGGGVKSQFLFDAGRFAIINNQQSGAFTLPFVVENNQVFINSLLVKNGSIGNAQIADQINSNNWQSDAAGWMINKNGYAEFNQVTVRGGVYASHGSFTGSVYAQDGWFRGTVYAEKIEGDVAKAVVLPFNSSVHIPAVNYNRHLAIPYVGVNARTYSGGAWGKGTVWIDSTYGGRLSTAQTAALSGGSTGYILLPAGNATTLTFSGSLDHADAVPFVTVLLFKA
Physico‐chemical
properties
protein length:1273 AA
molecular weight: 140722,77140 Da
isoelectric point:5,03221
aromaticity:0,09427
hydropathy:-0,31202

Domains

Domains [InterPro]
DC_0014
STR
2–1258
DC_0014
IPR053171
Unmapped
18–892
IPR053171 IPR015406
IPR055385
ATT
107–231
IPR055385 IPR032876 IPR036116
IPR003961
STR
641–730
IPR003961
IPR013783
STR
641–734
IPR013783
YAF80398.1
1 1273
Architecture
STR
ATT
STR
ATT
STR
STR 2-106 | ATT 107-231 | STR 232-353 | ATT 354-509 | STR 510-1258 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF80398.1
1 1273
Domain Start End Length (AA) Confidence
N-terminal 1 515 515 0,8201
Central domain 516 1041 527 0,0878
C-terminal 1042 1273 231 0,4130
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-515
Central
516-1041
C-terminal
1042-1273

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-04
[NCBI] 		3459908 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF80398.1 [NCBI]
Genbank nucleotide accession
PX104384.1 [NCBI]
CDS location
range 16069 -> 19890
strand +
CDS
ATGTACAATGGCAGCACGTTTAAATGGCACAAAAGGTTAAAAGCTATGATCAAAAATATGATAACTGGCAGTAAGGGCGGTTCTTCAAAGCCTCATACACCTGTTGAAATGGAAGATAACCTAATTTCAATTAACAGGATCAGAATTCTTTTAGCCGTTTCTGATGGTGAAGTTGATCCAGACTTTTCATTGAAAGATTTATATTTTGATGACGTTCCGGTTATGAATCAGGATGGTTCACTAAACTTTCAGAATGTTAAAGCAGAATTCAGACCAGGAACGCAAACGCAGGATTATATTCAGGGGTTTACTGATACAGCCAGCGAAATTACAGTTGCTCGCGATCTGACAGCCGCAACGCCTTATATTATTTCCGTCACCAATAAAAACCTTTCTGCGATCCGCATTAAAATTTTAATGCCTCGCGGGGTTACTCAGGAAGATAACGGAGATCTAACAGGTGTCCGAGTTGAATATGCTGTTGATATGGCTGTTGATGGTGCTGAATATAAAGAGGTTTTGCATGATGTAATTGAAGGTAAAACAATGAGCGGTTACGACAGAAGCCGCCGAATTGATTTACCTGTTTTCAATGATCGTGTTTTATTGCGCGTCCGTCGCCTGACAGATAGCACGTCAGCAAGGGTAACGGATCTGATTAAAATGCAAAGCTATGCGGAAGTTGTAGATGCTAAATTTCGTTACCCCTTGACTGGTTTAGTATATGTTGAGTTTGACAGCGAATTATTCCCTAATGCGTTGCCGAATATCAGCATTAAGAAAAAATGGAAAATCATTAATGTTCCGTCAAATTATGATCCTATTTCCCGCACTTACTCAGGGTCATGGGATGGAACCTGGAAAAAGGCATGGAGTAATAACCCTGCTTTTGTTCTGTATGATTTGATTACCAATCAGCGTTACGGACTCGATCAAAGAGAATTAGGCATCGCGCTTGATAAATGGAGCATTTACGAATGTGCGCAGTATTGCGATCAGATGGTTCCAGACGGTAAAGGCGGAACAGAGCCGCGCTATCTTTGCGACGTTGTGATCCAGAGCCAGGTAGAAGCGTATCAGCTTGTCCGTGATATTTGCTCAATCTTTCGAGGAATGAGTTTTTGGAACGGTGAAAGCCTTTCAATTGTGATCGATAAGCCGCGCGATGCGTCATACATCTTTACCAATGACAACGTGGTTAATGGTGAGTTTACTTACACGTTTGCCAGCGAGAAAAGCATGTACACGCAATGTAACGTGACTTTCGACGACGAACAAAACATGTATCAACAGGATGTTGAGGGAGTTTTCGAAACGGAGGCGGCGTTACGCTTTGGATATAACAGCACGTCAATAACTGCTATCGGTTGCACTCGACGTAGTGAGGCTAATCGCCGTGGGCGCTGGATTCTGAAAACCAACGTCAAGAGCACAACGGTAAACTTTGCTACAGGTCTGGAAGGTATGATCCCAACCGTAGGCGATGTGATTGTTGTATCTGATAATTTTTGGTCAAGCGCTCTAACGCTGAATCTATCAGGTCGCGTGATGGAGGTTAGCGGGTTGCAGGTGTTCACGCCGTTTAAGGTTGACGCAAGAGCAGGTGATCGCATTCTGGTAAATAAGCCGGATGGTAAGCCAGTTGGTCGAACCATTGCGCGTGTAAGTGATGACGGTAAAACGCTAACGCTAAACACGACATTTGGCTTTGACGTTCAGCCAGATACCATTTTTGCAATTGAGCGAACCGATATTGCACAGCAACGATATGTTGTAACCGGAATCACTAAGGGTGACGGTGATGAAGAATTTACCTACAACATAACGGCTGTTGAATACGATCCTAACAAATACGATGAAATTGATTATGGCGTAAACATTGATGACCGTCCGACTTCAATCGTGCAGCCTGACATTTTGCCAGCGCCGCAAAACGTCAAGATCGAATCTTATTCGCGAGTTGTCCAGGGCGCGAGCGTGGAAACAATGCACGTTTCATGGGATAAGGTTGAATATGCAAGCCTTTATGAAATGCAGTGGAGAAAAGACAATGGCAACTGGAACAACACGCCGCGCACAGCCAACAAGGAAACGGAAGTTGAAGGAATTTATGCCGGAAACTATCACGTAAGGGTTAGATCTGTTGCAGCGAATGGTTCAGCGTCTGGATGGTCAGCCATTGTAAGCGCCGGATTAACTGGCAAGGTTGGCGAACCGGAAAGGCCAATTAACCTTACTGCGTCTGACAATGAAGTTTTCGGAATTCGCGTAAAATGGGGTATGCCAGAAGGAAGCGGAGACACGGCATATATTGAGTTACATCAAGCGCCAAACGGTTCTGATGGTCATCCTATTGTTGATGAAGCAACGCTCTTAACGCTGATACCGTTCCCGCAATATGAGTATTGGCATTCAATATTGCCAGCGGGTCATGTTGTCTGGTACAAGGCAAGGGCTGTTGACAAAATCGGGAATGTTTCTGATTGGACTGATTTTGTGCGCGGCATGGCATCAACTGACACAAGCATTATTACAGATCACATTAAGGTTGATATTGAAAATTCGGAGGGCTACAAATGGCTTGAAGAGAACGCGATTAAATCAAACGATAAGATCCACAGTGCAGCAGAATCAATCATTCAAAACGCGTTAGCGAATGATACTGATGTTAGACGTATGCGAGTAGAGAACGGCAAGCGCAAAGCTGAATTCTTGCAGTCTCTAAAACTGATTGCAGATGAAACGGAAGCGCGAGTAACCGCAATCACTCAATTAAATGCACAATTTGACGAGAAATTAACGGCTCAAAATAGCGAATTGAGAGAGGTAATTGCTAACAGCACAGAAACCCTTAGCCAGCAGATTAATCAGCTTACAGCTACGTTTGAGAGTGAAATTGATGGGGTTAAGCAGGATATCAAAGCACAGATAACTGATGTTAACCAGGCAATCACTAATGAAGCGGAAGCGCGAGCGTCAGCGGATAGGGCGTTATCAACTCAAATTGGAGATACCCAATCAGCAGTTAATCAGAAACTTGATTCTTGGGTTAATGCCGATAGCGTTGGTGCGATGTACGGCGTTAAGTTGGGGATCAGGTATAACGGGCAGGAATATAGCGCAGGTATGGCGCTTTCTCTTGTCGCTGATGGTGGCGGAGTTAAATCACAATTCCTGTTTGATGCCGGACGATTTGCGATCATAAACAACCAACAGAGCGGAGCCTTTACATTGCCGTTTGTAGTTGAGAATAACCAGGTGTTTATCAATAGCTTGCTTGTGAAAAACGGCTCTATTGGCAATGCTCAGATTGCGGATCAGATTAACTCTAACAACTGGCAGAGCGACGCGGCTGGATGGATGATCAATAAGAATGGTTATGCCGAATTCAACCAGGTAACTGTAAGGGGTGGCGTTTATGCTTCACACGGATCATTCACTGGCAGCGTTTACGCGCAAGACGGATGGTTTAGGGGTACTGTTTACGCTGAAAAAATTGAGGGTGACGTTGCAAAGGCTGTTGTTCTTCCGTTTAACAGTTCGGTTCACATTCCGGCGGTTAACTACAACAGGCATCTTGCGATTCCATATGTTGGCGTTAACGCGAGGACTTATTCTGGTGGTGCGTGGGGTAAAGGTACTGTCTGGATAGATTCAACTTATGGAGGAAGGTTATCAACAGCACAAACGGCGGCGCTTTCTGGTGGGAGCACTGGTTACATTCTTTTGCCAGCCGGTAACGCGACAACCCTAACATTCTCAGGAAGTCTTGATCATGCTGATGCTGTACCATTTGTAACCGTTCTTCTTTTCAAAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a555c7c45e7bad5f7368bfa43b54c7dbc6f964a4c55728b79196808a0318d906
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7986
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank