Protein

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Genbank accession
AAL82322.1 [GenBank]
Protein name
holin-like protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MQSFVKIIDGYKEEVITDFNQLIFLDARAESPNTNDNSVTINGVDGILPGAISFAPFSLVLRFGYDGIDVIDLNLFEHWFRSVFNRRHPYYVITSQMPGVKYAVNTANVTSNLKDGSSTEIEVSLNVYKGYSESVNWTDSEFLFDSNWMFENGIPLDFTPKYTHTSNQFTIWNGSTDTINPRFKHDLKILINLNASGGFELVNYTTGDIFKYNKSIDKNTDFVLDGVYAYRDINRVGIDTNRGIITLAPGKNEFKIKGDVSDIKTTFKFPFIYR
Physico‐chemical
properties
protein length:274 AA
molecular weight: 31189,61160 Da
isoelectric point:5,14304
aromaticity:0,14234
hydropathy:-0,26131

Domains

Domains [InterPro]
IPR008841
STR
8–126
IPR008841 DC_0197
AAL82322.1
1 274
Architecture
STR
STR
STR 8-126 | STR 133-274
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAL82322.1
1 274
Domain Start End Length (AA) Confidence
N-terminal 1 192 192 0,9413
Central domain 193 263 72 0,1222
C-terminal 264 274 10 0,2631
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-192
Central
193-263
C-terminal
264-274

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phi 12
[NCBI] 		2905946 Uroviricota > Caudoviricetes > Triavirus >
Host Staphylococcus aureus subsp. aureus NCTC 8325
[NCBI] 		93061 Bacteria > Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAL82322.1 [NCBI]
Genbank nucleotide accession
AF424782 [NCBI]
CDS location
range 35281 -> 36105
strand +
CDS
ATGCAATCTTTTGTAAAAATCATAGATGGTTACAAGGAAGAAGTAATAACAGATTTTAATCAGCTTATATTTTTAGATGCAAGGGCTGAAAGTCCAAACACCAATGATAACAGTGTAACTATTAACGGAGTAGATGGTATTTTACCGGGCGCAATTAGTTTTGCGCCTTTTTCATTAGTATTAAGGTTTGGCTATGATGGTATAGATGTTATAGATTTAAATTTATTTGAGCATTGGTTTAGATCTGTGTTTAATCGCAGACATCCTTATTATGTTATTACTTCTCAAATGCCTGGTGTTAAATATGCAGTGAATACAGCTAATGTTACATCTAATTTAAAAGATGGTTCTTCAACTGAAATTGAAGTAAGTTTAAATGTTTATAAAGGGTATTCTGAATCAGTTAATTGGACCGATAGCGAGTTCTTATTCGACTCTAATTGGATGTTTGAAAATGGAATTCCTCTTGATTTCACACCTAAATATACTCATACATCAAATCAATTTACTATTTGGAACGGTTCTACTGATACGATAAATCCACGATTCAAGCACGATTTGAAAATATTAATTAATTTAAATGCGAGTGGAGGATTTGAACTGGTTAATTATACAACAGGTGATATTTTTAAGTACAACAAAAGTATAGATAAAAACACTGATTTTGTTTTAGATGGTGTGTATGCATATCGAGATATAAACAGAGTGGGAATTGATACAAATAGAGGCATTATAACATTAGCGCCAGGTAAAAATGAATTTAAGATTAAAGGAGACGTCAGTGATATTAAAACTACATTTAAGTTTCCTTTTATTTATAGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
95f4cf92297e54cec2115f0ec04e4b43866c84570d552e7421caca4d9e65829e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9250
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative analysis of the genomes of the temperate bacteriophages phi11, phi12 and phi13 of Staphylococcus aureus 8325 Iandolo,J.J., Worrell,V., Groicher,K.H., Qian,Y., Tian,R., Kenton,S., Dorman,A., Ji,H., Lin,S., Loh,P., Qi,S., Zhu,H. and Roe,B.A. 2002 12036589 GenBank