Protein

View in Explore
Genbank accession
ATE86083.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIYDLGTASLAANGEITGVGTTWKAPLTLIRVGATIVFKTEPVQIYTISEIISDTQINVYNPNSETAPAGTGYAILAHDGITVQGLAQDVAETLRYYQSKETSIESLIEIIENSDIDVIDGKIQEMQQILSSTMAAEASAKSSSDSALEYSNESINSSNESKSARDEAVAAKNSTIEAINNAGDAGTLVTLSNSSGASLIGTADGVTVQEAITNINSELSSVSGLRGDLASVDGSSLVYLPSYDDLRSYSGTATYLYVRGRSAGTTLACGWFGISLEDTTTPDDDGTILVDALNRRWVRIFNGVLLPEWFGADPSGTSDCTSAFNKCFASAKGKEVKLGGKYKFLNPIVVDYGDQYSLKVSGTGSSNHKSGAKTDNYCYLDFDDIPEGSRALTFKGVRGLNLNDFHISHRKASSSVSIALWITQLDNFKIDGLSIDSNSGPSGQGIRFGESSGEDCAFMGSVSNCKVWMHGGGPAFAVQPLCTSITLKNCYQIGGYYYFQGCIYMSMLSCASEGSQVNGYGYVLYSVKGLTAINCAGEGNKNGVFYISNGSSNVEIISPFGSGNNSGNTAIPGALVYVDGSSGFNANIHIDNPVSENQGSNTVNDIGFSSSNKNISVSNVYSQNLSKGIGGSDSWAALDLSVSGDLSQRRFTFTTSGFTVSSPVMSGRYVRNGKRVDFHLSFSGSSVINTTLGSSLLQLPFGSLVAESVCSVTSNTGTSFGNAIINSSGNIYLPTTSGATGFVISGSIITE
Physico‐chemical
properties
protein length:752 AA
molecular weight: 78999,50360 Da
isoelectric point:4,70936
aromaticity:0,08511
hydropathy:-0,07766

Domains

Domains [InterPro]
DC_0313
STR
1–746
DC_0313
IPR011050
STR
308–662
IPR011050
IPR012334
STR
309–752
IPR012334
ATE86083.1
1 752
Architecture
STR
STR 1-752
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ATE86083.1
1 752
Domain Start End Length (AA) Confidence
N-terminal 1 320 320 0,9911
Central domain 321 644 325 0,9904
C-terminal 645 752 107 0,9884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-320
Central
321-644
C-terminal
645-752

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sd1
[NCBI] 		2024313 Uroviricota > Caudoviricetes > Drexlerviridae > Wilsonroadvirus > Wilsonroadvirus Sd1
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ATE86083.1 [NCBI]
Genbank nucleotide accession
MF158042 [NCBI]
CDS location
range 8035 -> 10293
strand +
CDS
ATGGCGATTTATGACTTAGGAACAGCGTCGCTGGCCGCAAATGGCGAGATAACTGGCGTCGGGACAACATGGAAAGCACCTCTTACATTGATCAGAGTTGGTGCAACCATTGTATTTAAAACTGAGCCAGTACAAATTTACACCATATCTGAGATCATCAGCGACACACAGATTAATGTTTATAACCCCAATTCTGAAACTGCCCCTGCCGGAACTGGTTACGCGATTCTTGCTCACGATGGGATTACCGTTCAGGGTTTGGCTCAGGATGTTGCTGAAACTCTGCGTTACTATCAGTCAAAAGAAACTTCAATTGAGTCCTTAATTGAAATAATTGAAAACTCAGATATTGATGTTATTGATGGTAAAATTCAGGAAATGCAGCAAATTCTAAGTAGCACAATGGCAGCAGAAGCGTCAGCAAAATCAAGTAGTGATAGCGCTCTTGAATACAGTAATGAATCGATAAACAGTTCTAATGAGTCAAAGTCTGCAAGGGATGAGGCGGTAGCTGCTAAGAATTCGACAATTGAAGCTATTAATAACGCAGGAGATGCTGGAACACTGGTTACACTCTCCAATTCTAGCGGCGCTTCTCTTATCGGCACGGCTGATGGCGTCACTGTTCAGGAGGCAATTACAAATATAAACTCCGAACTAAGCTCTGTGAGTGGTTTGAGGGGAGATTTAGCCAGTGTAGATGGTTCAAGTTTGGTCTATCTCCCGAGCTACGATGACCTGCGTTCGTATTCTGGCACAGCAACATATCTATATGTCAGAGGGCGAAGTGCTGGAACCACATTGGCCTGTGGGTGGTTTGGCATTTCCCTTGAGGATACTACAACGCCAGACGATGACGGGACAATTTTAGTCGACGCCCTCAATCGGAGATGGGTTCGTATATTTAATGGGGTCTTACTTCCAGAATGGTTTGGGGCCGATCCATCAGGAACTTCAGATTGCACGAGCGCTTTTAATAAATGCTTCGCATCTGCAAAAGGAAAAGAGGTAAAACTAGGCGGTAAGTATAAATTCCTTAACCCTATTGTAGTTGACTACGGGGATCAGTATAGCCTCAAGGTTAGTGGCACCGGGAGCTCAAACCATAAGAGTGGCGCGAAGACAGATAACTACTGTTATCTTGATTTTGATGATATCCCAGAAGGCTCGAGAGCTTTAACATTCAAAGGTGTAAGAGGTCTTAACCTAAATGATTTCCATATATCACACCGTAAAGCTAGCTCGTCGGTATCGATTGCTTTATGGATTACTCAGCTTGATAACTTTAAAATTGATGGTTTAAGTATAGATTCAAATTCTGGCCCATCTGGTCAGGGTATTCGTTTCGGAGAGTCTAGTGGTGAAGACTGTGCTTTCATGGGGTCGGTGTCAAATTGCAAAGTATGGATGCACGGGGGCGGGCCAGCATTTGCAGTGCAACCTTTATGCACATCAATAACACTAAAGAACTGCTATCAAATAGGGGGGTATTATTATTTTCAAGGCTGCATTTACATGTCCATGCTATCTTGTGCCTCAGAAGGAAGTCAGGTAAACGGTTATGGTTATGTTCTGTATTCCGTGAAAGGGCTCACGGCCATAAACTGTGCAGGTGAGGGAAATAAAAATGGAGTTTTTTACATTTCTAATGGATCAAGTAACGTAGAAATAATTTCTCCTTTTGGCTCTGGCAACAACTCGGGTAATACAGCTATACCTGGCGCCCTTGTTTATGTGGATGGAAGTAGTGGGTTTAATGCTAATATTCATATAGATAACCCCGTGAGCGAGAATCAAGGCTCAAACACAGTTAATGATATTGGTTTTAGTTCTTCCAATAAAAACATTAGTGTATCAAACGTGTATTCGCAGAATCTATCAAAAGGAATCGGTGGCTCTGATTCGTGGGCGGCTTTAGATCTTAGTGTTAGTGGGGATTTATCACAAAGGCGATTTACCTTCACCACTAGTGGTTTCACGGTGTCATCACCGGTGATGAGTGGGAGGTACGTTAGAAATGGTAAGAGGGTTGATTTCCACCTATCATTTAGCGGAAGCTCTGTAATAAACACAACACTTGGCTCGAGCCTTTTACAGCTTCCATTTGGTTCGTTGGTTGCTGAATCAGTATGCTCTGTTACTAGTAATACTGGCACCAGTTTTGGAAATGCAATCATAAATTCCAGTGGAAATATCTATTTACCAACAACTAGCGGAGCCACTGGTTTTGTAATTTCTGGCTCAATCATCACGGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
94bb191c536b441239369d3deb29b3afcb11dff345cf2a276f635ace97c2be12
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8078
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank