Protein

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Genbank accession
YP_010111557.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLQSENYVFTGLQQDAAVSKQQPQYLIDAHNIRITARNGETLLSVTNEKGPKELIIKNSIGTNVLITGTILGHCVLNNYLVLFTHEDTTGDKILRIDMSKDNPEMITLFPKEGDKSLGFDAKYPIETIGDYENENIQKVYWTDGLNQPRVINIMHSPYTWAGSFDFVPELALNENVTVEKITSSSGQFPSGVIQYAFTYYNKYGQESNIFYTTPLFYTSFYDRGGSPEDKVSNAFNIKVEGVDNHFDYLRIYSILRTSIDATPVCKRIQDIALEGASTVSYVDNGISGDDIDPASLLYIGGEEIVAQSICAKDGTLFLGNLKIKRPSISTIPNFVTNIRKSLDSVSTEPMKVTLKSVSTSSNYIYSNGLNTQAAGFKNREYYRLGIQAQYKNGKWSEPIWIGDYQVGGAKGLANYPAIKDNTLNKIVLNYAINSARIEELKNAGYKKVRPVVVFPDVQDRTIICQGIVNPTMYTYTNRAIDKNLYSQSSWFFRPFINEVNGGSDYANTNNNAYSNKICSPFSLHTFSIPYTNNNLNWDPKIIRSVEVQGQFNTDNQFKTDWGFVTLHSPELDFDEAIYNIDLTGVSLLDVGVAAITSCSSDIDIQTSTPTISNSGSGFTHKSFTDDNGSKGIISGLFYDDCLVDDYDKGSKFRAYDKQRSSAKWLVYPWQRNGSLNNDCNRPAGGGLRSAELSKKVISNLRFSKSTIWNESSSTRTIYGTPQVFNSNEVAIVKVGNDIYEGNIDTLLSSDAGEGSYFAFGTQASESNDGTKYITTEAITEFDSISWWKTWSKREDGADNQGLYKRIYVKNKGAWLWVRTDSRIADSVPILAIKKEAVRMKYKSTPHIVLKCFAYSNLATINNNSVLPVVELCRKYNANTMFGGQSLDALRANIWIPAGKAISTASTGTLVFEYGDTWYSRYDCLKTYPFTREDTNQIVEIGSFMLETRLNIDGRYDRNRGQMDNTNMSPINFNLFNPVYSQRNNFFSYRILDDDFYKLNEFPNQITWSTEKVQGSDIDPWTSITLASTYSMDGSKGQIRSLNTWNDSIYCFQDSGICSILFNSRVQIPTSDGVPIEIANNYKVDGKRYISDGVGCINKYAICPTPQALYFIDSVGGHLQAINSNGLADLSLQKNMVTWLSKQDTSIWKPDNYTIKVFYDKNNNDLYITTKTESLCYNEVVGQFVSYMPYSNTPTMFNVVDKFYCIKNNYLNEMFAGDYNYFFGEYYGYDLTFVSNGSSKGITSMDKIFNNIDFRADRWSDKLDSILSSECPFDYIRVWDEYQDTGEVLLKNKGNIPSNLKKKFRVWRIQVPRDAHNRRDRIRNTWCKIKLGAAPRYNNGNNGFIQFHDANVQYFI
Physico‐chemical
properties
protein length:1355 AA
molecular weight: 153234,79850 Da
isoelectric point:5,80380
aromaticity:0,12399
hydropathy:-0,42679

Domains

Domains [InterPro]
IPR057889
STR
3–1208
IPR057889 IPR057888
DC_1981
RBD
1202–1355
DC_1981
YP_010111557.1
1 1355
Architecture
STR
RBD
STR 3-1208 | RBD 1209-1355
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010111557.1
1 1355
Domain Start End Length (AA) Confidence
N-terminal 1 491 491 0,4165
Central domain 492 794 304 0,8552
C-terminal 795 1355 560 0,4012
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-491
Central
492-794
C-terminal
795-1355

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr116_1
[NCBI] 		2772073 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010111557.1 [NCBI]
Genbank nucleotide accession
NC_055882 [NCBI]
CDS location
range 66367 -> 70434
strand -
CDS
ATGTTACAATCAGAAAATTATGTATTTACTGGGCTGCAACAAGATGCTGCGGTATCTAAACAGCAGCCTCAGTATTTAATAGATGCACATAATATTAGAATTACAGCAAGAAATGGAGAAACTCTTCTGTCTGTTACTAATGAGAAAGGTCCAAAGGAGCTTATTATAAAGAATAGTATTGGAACTAATGTGCTTATTACAGGTACTATCTTAGGACATTGTGTTCTTAATAATTACTTAGTTCTATTTACTCATGAAGATACTACTGGTGATAAGATTCTAAGAATTGATATGTCTAAGGACAATCCAGAGATGATTACTCTATTTCCAAAAGAAGGAGATAAGAGTCTAGGATTTGATGCCAAGTATCCTATTGAAACTATTGGAGATTATGAGAATGAAAATATTCAGAAAGTATATTGGACTGATGGATTGAATCAACCTAGAGTTATTAATATAATGCACTCTCCTTATACTTGGGCAGGGTCATTTGACTTTGTTCCAGAGCTGGCTCTTAATGAGAATGTAACTGTAGAAAAGATAACAAGTTCAAGTGGACAGTTTCCAAGTGGAGTGATTCAATATGCTTTTACTTACTATAATAAATATGGACAGGAGAGTAATATATTTTATACTACTCCTCTGTTCTATACTTCATTCTATGATAGAGGAGGGTCACCTGAAGATAAAGTATCTAATGCTTTTAATATAAAAGTAGAAGGTGTTGATAACCACTTTGATTATCTAAGAATATATAGTATTCTAAGAACATCTATTGATGCTACTCCAGTATGTAAAAGGATTCAAGATATAGCACTTGAAGGAGCTTCTACAGTATCTTATGTTGATAATGGTATTAGTGGAGATGATATTGACCCTGCATCATTATTGTATATTGGAGGTGAGGAGATAGTAGCACAGAGTATATGTGCTAAAGATGGTACATTGTTCTTAGGTAATCTAAAGATTAAGAGACCTAGTATTAGTACTATTCCAAACTTTGTAACTAACATACGAAAGAGTTTAGACTCTGTTTCTACAGAACCAATGAAGGTAACATTGAAAAGTGTATCAACCTCATCTAATTATATTTATTCTAATGGTTTAAATACTCAAGCAGCTGGATTTAAGAATAGAGAATATTATAGACTAGGAATCCAAGCACAATATAAGAATGGTAAGTGGTCAGAACCTATATGGATAGGAGACTATCAAGTAGGAGGAGCTAAAGGATTAGCTAATTATCCTGCAATTAAGGACAATACATTAAATAAGATAGTACTTAACTATGCTATAAACTCTGCTAGAATTGAGGAACTTAAGAATGCTGGCTATAAAAAAGTTAGACCTGTTGTAGTATTCCCAGATGTTCAAGATAGAACAATTATATGCCAAGGTATAGTTAATCCAACTATGTATACTTATACTAATAGAGCCATTGATAAGAATCTATATTCCCAATCTTCTTGGTTCTTTAGACCATTCATTAATGAAGTCAATGGAGGGAGTGATTATGCAAACACAAACAACAATGCTTATAGTAATAAAATATGCTCCCCTTTCTCACTACACACTTTTAGTATTCCTTATACAAATAATAATTTAAATTGGGACCCAAAAATTATTAGAAGTGTAGAAGTGCAAGGTCAGTTTAATACTGATAATCAGTTTAAAACTGATTGGGGATTTGTAACTCTTCACTCTCCAGAACTAGACTTTGATGAGGCTATTTATAATATAGACTTAACTGGGGTGTCTTTGTTGGATGTAGGTGTAGCAGCAATAACTTCTTGTAGTAGTGATATAGATATACAGACTTCTACTCCTACTATTAGTAATAGTGGTTCAGGATTTACTCACAAGTCATTTACTGATGATAATGGTTCAAAAGGAATTATTAGTGGATTATTCTATGATGACTGCCTTGTAGATGACTATGATAAGGGTAGTAAATTTAGAGCCTATGACAAACAAAGAAGTTCTGCAAAGTGGCTAGTATATCCTTGGCAAAGGAATGGCTCTTTAAATAATGACTGTAATAGACCAGCAGGAGGTGGTTTAAGAAGTGCTGAACTTAGTAAAAAGGTAATATCTAATTTAAGATTCTCAAAATCTACTATCTGGAATGAGAGTTCTAGTACAAGAACTATCTATGGCACTCCTCAAGTATTTAATAGTAATGAAGTTGCTATTGTAAAGGTAGGAAATGATATTTATGAGGGAAATATAGACACTTTACTTTCTTCTGATGCTGGAGAAGGAAGTTATTTTGCCTTTGGTACACAAGCTTCTGAATCTAATGATGGTACAAAGTACATTACTACTGAGGCAATTACTGAGTTTGATAGTATTTCTTGGTGGAAAACTTGGTCTAAAAGGGAGGATGGAGCAGATAATCAAGGTTTATATAAAAGGATTTATGTTAAAAATAAAGGGGCATGGTTATGGGTAAGAACTGATAGTAGGATTGCAGATTCTGTTCCTATTCTAGCTATCAAGAAAGAAGCTGTTAGAATGAAATATAAATCCACTCCTCATATTGTATTAAAGTGCTTTGCTTATTCCAACCTAGCTACTATTAATAATAACTCAGTATTGCCAGTAGTAGAACTGTGTAGAAAGTATAATGCTAATACTATGTTTGGAGGTCAAAGTCTTGATGCTTTAAGAGCTAATATTTGGATTCCTGCTGGTAAAGCTATTTCAACAGCATCAACAGGAACTTTAGTATTTGAATATGGAGATACTTGGTATAGTAGATATGATTGTCTAAAAACTTATCCATTCACAAGAGAAGACACTAATCAGATTGTTGAGATAGGCTCATTCATGCTAGAAACAAGGCTTAACATTGATGGTAGATATGATAGAAATAGAGGTCAGATGGATAACACTAATATGTCTCCAATCAACTTTAATCTATTTAATCCTGTATATTCTCAAAGAAATAACTTCTTCTCTTATAGAATCTTGGATGATGACTTTTATAAGTTAAATGAATTTCCTAATCAGATTACTTGGAGTACTGAAAAAGTTCAAGGTTCTGATATTGACCCTTGGACATCTATAACACTTGCTTCCACATATAGTATGGATGGTTCCAAAGGACAAATTAGGTCTCTTAATACTTGGAATGATAGTATCTATTGTTTCCAAGATAGTGGTATCTGTAGTATATTATTCAACTCAAGAGTTCAAATTCCAACATCTGATGGTGTACCTATTGAAATAGCTAACAACTATAAGGTTGATGGCAAGAGATATATCTCTGATGGAGTAGGATGTATAAATAAATATGCTATATGTCCTACACCTCAAGCATTATATTTTATTGACTCAGTAGGGGGACATTTACAAGCTATTAATAGTAATGGGCTAGCTGACTTATCTCTACAGAAGAATATGGTTACATGGTTAAGTAAGCAAGATACTTCTATATGGAAGCCTGATAATTACACCATTAAAGTATTCTATGATAAGAATAATAATGACTTATATATCACTACAAAGACTGAATCATTATGCTATAATGAGGTAGTAGGTCAGTTTGTATCATATATGCCTTATAGTAATACTCCCACTATGTTTAATGTAGTTGATAAATTCTATTGTATAAAGAACAACTATCTAAATGAGATGTTTGCTGGGGATTATAACTATTTCTTTGGTGAGTATTATGGTTATGACTTGACTTTTGTATCTAATGGTAGTAGTAAGGGCATTACATCAATGGATAAAATATTTAATAACATTGATTTTAGAGCAGATAGATGGTCAGATAAACTTGATAGTATATTATCATCTGAGTGTCCTTTTGATTACATTAGAGTTTGGGATGAATATCAAGATACTGGTGAGGTATTACTAAAGAATAAAGGCAATATTCCATCTAACTTAAAGAAGAAGTTTAGGGTATGGAGAATACAAGTTCCAAGAGATGCTCACAATAGAAGAGACAGGATTAGAAATACATGGTGTAAGATAAAACTTGGTGCAGCACCAAGATATAATAATGGCAATAATGGATTTATTCAATTCCATGATGCTAATGTACAATACTTTATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
4f944f1263bcd8b8ba22fea18c5427cb52fcdd56f058d065c7920d213aca6f48
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8474
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank