Protein

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Genbank accession
AWY10485.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MSLASQSVKNLKGGISQQPDILRFPNQGEQQINGWSSETQGLQKRPPTKFIKRFGATGSWGSKPLVHLVNRDAVEQYYMVFTGTGLVVVDLKGTTYQVRGYDGYANCPDPRGDLRLITIADYTFVVNRRTVVKMGDALTHPGYPSLTSRALIACRGGQYGRTLSVTANGHLLASYKLPSGVAVEDKLAEMVAAMDAQAILTELAKQVNAKTATTGISAEVGEAYLVLKGADIQSIKTADGYADQLINGFIYQVQSFNKLPAQAPDGYLVEVTGEASRSGDNYWVRYDLKGRVWRETVEPGIIAGFNAQTMPRGLVRAADGHFDWKVLDWADRKSGDNETNPMPSFVDGTINDVFFFRNRLGFLSGENVIMTRSARYFSFFPPSVASLSDDDPLDLAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSSGILSPKTVELNLTTEFDVQDTARPFGIGRGVYFSAPRAAFTSLKRYYAVQDVSDVKNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGAPSRLYVYKFLYLNEDIAQQSWSHWEFGDDVSILAAASIGSYMYILMDRHEGVVLERVEFTAFTRDFPEEPYRTYIDAKVMTTCTVYDEDLNLSSLNLLDLYGAPPHNTTRFWSIDTDGVSVLHEAPTGGWAADARLYLQGDQRGRRFVIGRQFLFLYEFSKFLIKQTADDGSVTTEDSGRLQLRRAWLNYESSGSFEVNVNNGYAQYVYTMAGGRIGSEVRLGELSLGTGQYKFPVTGNALKHRVTLMSDAPNPLNVIGCGFEGNYVRRTNGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88022,92850 Da
isoelectric point:5,68909
aromaticity:0,11209
hydropathy:-0,24005

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
AWY10485.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AWY10485.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 145 145 0,9923
Central domain 146 348 204 0,0845
C-terminal 349 794 445 0,1413
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-145
Central
146-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PFP1
[NCBI] 		2201462 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Pfluvirus
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AWY10485.1 [NCBI]
Genbank nucleotide accession
MH268168 [NCBI]
CDS location
range 25914 -> 28298
strand +
CDS
ATGAGTCTGGCGAGCCAGTCCGTAAAGAACCTGAAGGGTGGCATCAGTCAACAGCCGGACATCCTCCGGTTTCCCAATCAGGGCGAGCAACAAATCAATGGGTGGTCCTCCGAGACTCAAGGTCTTCAGAAGCGGCCACCTACCAAGTTCATCAAGCGCTTTGGCGCAACGGGGTCATGGGGTTCCAAGCCCCTTGTCCACCTCGTGAACCGTGATGCGGTCGAGCAGTATTACATGGTGTTCACTGGCACAGGTCTCGTTGTGGTGGACCTCAAAGGGACGACCTATCAGGTCCGTGGATACGATGGCTATGCCAACTGTCCTGACCCTCGTGGGGACCTCCGGCTGATCACCATTGCTGACTACACCTTCGTTGTGAACCGCCGCACAGTGGTCAAGATGGGAGACGCCCTGACACATCCGGGCTACCCTTCGCTGACCTCAAGGGCTCTCATTGCGTGCCGTGGTGGACAGTATGGCCGGACCCTTTCGGTCACCGCTAACGGTCACCTCTTGGCTTCCTACAAGTTGCCTTCAGGGGTTGCCGTTGAGGATAAGCTGGCCGAAATGGTTGCTGCAATGGACGCCCAAGCGATCCTCACTGAGCTGGCCAAACAGGTCAACGCGAAAACAGCCACGACCGGTATCTCTGCGGAAGTGGGTGAAGCCTATCTGGTCCTTAAAGGTGCTGACATCCAGTCAATCAAGACGGCTGACGGCTACGCTGACCAGTTGATCAACGGCTTTATCTATCAGGTTCAGTCATTCAACAAGCTGCCCGCTCAGGCCCCTGATGGCTACCTCGTGGAGGTCACGGGTGAAGCCTCACGCTCAGGCGACAACTACTGGGTCCGTTATGACCTCAAGGGTCGTGTGTGGCGTGAGACGGTTGAGCCGGGGATCATTGCGGGCTTCAATGCTCAGACGATGCCTCGTGGTCTGGTCCGTGCTGCTGACGGCCACTTTGATTGGAAGGTCCTTGACTGGGCTGACCGGAAGTCTGGCGACAACGAGACCAATCCGATGCCTTCCTTCGTGGACGGTACGATCAATGACGTGTTCTTCTTCCGTAACCGGCTGGGCTTCCTGTCCGGGGAGAACGTGATCATGACCCGATCAGCGCGATACTTCAGCTTCTTCCCACCAAGCGTGGCGAGCCTGTCTGACGATGACCCGCTGGATCTGGCCGTATCCCACAACCGAATCTCGATCCTTAAGTACGCCGTACCGTTCTCTGAACAGTTGCTGCTATGGTCTGATCAGGCCCAGTTCGTGTTGTCCTCTTCAGGCATCCTATCGCCCAAGACGGTTGAGCTGAACCTGACCACAGAGTTCGACGTACAGGACACCGCTCGGCCTTTCGGGATCGGACGTGGTGTGTACTTCAGCGCCCCTCGGGCTGCCTTCACGAGCCTCAAGCGTTACTACGCTGTGCAGGATGTGTCGGACGTTAAGAACGCTGAGGACGTATCTGCGCACGTTCCAAGCTACATCGAGAACCGGGTGTTCAACATCCACGGCTCAGGGACAGAGAACTACGTGACCCTGTTGTCGGACGGTGCCCCTTCCCGCCTGTACGTGTATAAGTTCCTCTATCTAAACGAGGACATCGCGCAGCAGTCGTGGAGCCACTGGGAGTTCGGCGATGACGTTAGCATCCTTGCGGCTGCCTCGATTGGTTCCTACATGTACATCTTGATGGACCGCCATGAAGGGGTCGTACTGGAGCGCGTGGAATTCACAGCGTTTACTCGGGACTTCCCTGAGGAACCTTACCGGACCTACATCGACGCCAAGGTGATGACGACCTGCACCGTTTACGATGAAGACTTGAACCTCTCGTCGTTGAACCTTCTGGACCTTTACGGAGCCCCACCGCACAACACGACCCGCTTCTGGTCCATCGACACGGACGGCGTGAGTGTTCTCCATGAGGCACCTACAGGCGGCTGGGCGGCTGACGCACGGCTGTACCTTCAGGGTGACCAGCGTGGCCGTCGCTTCGTGATCGGTCGGCAGTTCCTGTTCCTCTACGAGTTCTCGAAGTTCCTGATCAAGCAGACTGCCGACGATGGGTCGGTCACCACGGAAGACTCAGGTCGCTTGCAGCTTCGTCGTGCATGGTTGAACTATGAGTCCTCCGGGTCCTTTGAAGTCAACGTGAACAACGGCTATGCCCAGTACGTCTACACCATGGCCGGTGGCCGGATCGGTTCTGAGGTTCGCCTCGGTGAGCTGAGCCTTGGCACCGGTCAGTACAAGTTCCCCGTTACGGGCAACGCTTTGAAGCACCGTGTGACCCTAATGTCTGACGCACCGAACCCACTCAACGTGATCGGCTGTGGCTTCGAGGGTAACTACGTGCGGCGTACCAACGGGATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1e9813366ff9ddfedcbbd0246ef8a976b30d6f50a8d93aeda2efde6ec03221f5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9155
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of an novle T7-like phage PFP1 for Pseudomonas fluorescens Li,M. and Zhao,Q. 2018-08-17 — GenBank