Protein

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Genbank accession
WHM52750.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MAKPASINLSTVKRGDTYMVDFFFTDTDGTTDISAVTIDAQARREIDGALWFDLKPKVVDASKGHFRIHLTGDETRAITESPVNSFSGIYDIQFSWQGPSEIYVSTIIDGSISISKDVTQPVSLMNTGSNPGAPTPAADQTVNVYFSLDPGTPNYSDVVTAEELTPVQYQIAASMGLANVNVIDEVGEAVALTKKYRDEAAAIVTGGTATVDPEPGKIPLADEKGKIREGWLPDVAVFSSKSAVTAVQTLAHEQFAASGFINYGKNIVASLFPTINEGLNCRIDAPDMLLMGRVVTSQQGGSSKTAYPVVAVAGFVVKILGVNDRPSITGARVKFPKSPDGTVTYNKSTGESVTHADQSAAFLSADADPSVEVVTNRVDVYGFEFGKREINQSKPFLYLCGCNQSQATSIDGIDTVVGDNNPVFDGDTSVGKGVNLLNADTEQRIRLVNNPDNNVWVEGDTIYQFDVQQITIAGPGNGDWKNINPAKGDFLFDDNRPVLSKAGLPFVKSSEQGVFEDGKGNYFLVCGSVPRLNQGAFHPTYNPEGVSTFMAGGTWSKPYYAHNYINSTASCFKFNPSDSLEDGFIRTVGGKVWVGSIESGSSGHPSNKSYEVIYPSGQGGVVDCRRSAEDMGSREEASKIAIKYVNGSYRGEELYNSTTVSGEFTFTYTTDLSGLVTLPRECLDDTVECIVGSVRTTLQVTDGKVTLPDGAKTVTFTTRANVTKPSKNKPVLNAYDGVLGVFDATKKHTLLDFTIENGIISDYNAGSAPYSANLIYQISNSGQASLGIISDGKYLELSTPYGYTKNKARAGVQIPGVDL
Physico‐chemical
properties
protein length:819 AA
molecular weight: 87710,71800 Da
isoelectric point:4,84043
aromaticity:0,08913
hydropathy:-0,22967

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WHM52750.1
1 819
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9952
Central domain 262 596 336 0,9348
C-terminal 597 819 222 0,1838
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-596
C-terminal
597-819

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_1601
[NCBI] 		3038270 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WHM52750.1 [NCBI]
Genbank nucleotide accession
OQ719603 [NCBI]
CDS location
range 52055 -> 54514
strand -
CDS
ATGGCTAAACCTGCCAGTATTAACCTCTCAACAGTGAAGCGCGGCGACACCTATATGGTGGACTTCTTCTTTACCGATACCGACGGAACGACAGACATTTCTGCTGTCACTATCGACGCTCAGGCAAGAAGAGAGATTGACGGAGCTTTGTGGTTTGACCTAAAGCCTAAAGTCGTTGACGCGTCAAAGGGGCACTTTAGAATCCACCTTACCGGAGACGAGACCAGAGCAATAACAGAATCCCCTGTTAACTCGTTCTCAGGTATTTACGACATTCAGTTCAGTTGGCAAGGCCCATCTGAAATATACGTGTCTACCATTATCGACGGCTCTATTTCAATCTCTAAAGATGTCACTCAGCCAGTTTCGCTTATGAACACTGGGTCTAATCCTGGCGCGCCTACCCCTGCCGCGGATCAGACTGTAAACGTCTACTTCAGTCTCGATCCTGGCACGCCTAATTACAGTGACGTGGTAACTGCCGAAGAATTGACTCCAGTGCAGTATCAAATTGCAGCTTCGATGGGTTTAGCTAACGTCAATGTAATCGATGAAGTTGGCGAAGCGGTTGCGCTTACCAAAAAGTATCGAGATGAAGCAGCAGCTATCGTTACTGGCGGTACTGCAACCGTCGATCCGGAGCCAGGTAAGATCCCGTTAGCAGACGAAAAAGGTAAGATTCGCGAAGGGTGGCTTCCTGATGTAGCAGTATTTTCCTCGAAGTCTGCCGTTACCGCAGTGCAAACTCTAGCACATGAACAGTTTGCCGCTTCAGGGTTTATCAATTACGGCAAGAACATTGTAGCCAGCTTGTTCCCTACCATTAACGAGGGTTTGAATTGTCGTATCGACGCACCAGATATGCTGCTAATGGGTCGTGTCGTCACTAGTCAGCAAGGAGGTTCTTCAAAGACAGCTTACCCTGTCGTAGCCGTTGCAGGTTTCGTGGTTAAGATTTTAGGCGTTAACGATCGACCTTCTATTACAGGCGCGAGGGTTAAATTCCCAAAATCACCGGACGGTACGGTTACTTACAATAAGTCAACGGGAGAGTCAGTAACACACGCCGACCAATCAGCCGCTTTCTTATCGGCGGACGCTGACCCTAGTGTAGAGGTTGTTACCAATCGAGTTGATGTGTATGGGTTTGAGTTCGGCAAACGAGAAATAAACCAATCCAAACCGTTTCTGTACCTATGCGGGTGTAACCAATCACAAGCTACATCCATTGACGGTATAGATACCGTTGTAGGAGACAATAACCCGGTATTCGATGGTGACACTTCTGTAGGTAAAGGGGTTAATCTATTGAACGCAGACACCGAGCAAAGGATCCGATTAGTTAACAACCCCGACAACAATGTTTGGGTAGAAGGTGACACTATCTACCAGTTTGATGTTCAGCAAATAACTATTGCTGGCCCAGGTAACGGAGACTGGAAGAATATTAATCCTGCTAAAGGCGACTTTTTATTCGATGACAACAGACCTGTGCTGTCAAAAGCTGGGCTACCGTTCGTTAAGTCTTCCGAACAAGGTGTGTTTGAAGACGGTAAAGGTAACTACTTCCTAGTGTGCGGGTCAGTCCCTAGACTTAACCAAGGTGCTTTCCACCCAACATACAACCCTGAAGGTGTGTCTACATTCATGGCCGGAGGAACTTGGTCTAAACCGTACTACGCTCACAACTACATAAACTCTACTGCCAGTTGTTTTAAGTTCAACCCTTCCGATTCATTGGAAGACGGATTCATTCGAACTGTTGGAGGTAAAGTCTGGGTAGGTAGCATTGAGAGCGGATCATCTGGTCACCCTAGTAATAAATCGTATGAAGTTATTTACCCTTCTGGTCAAGGAGGTGTAGTTGACTGTCGTCGATCTGCCGAAGACATGGGAAGTAGAGAGGAGGCATCTAAGATAGCAATTAAATATGTCAATGGTTCCTACAGAGGAGAAGAACTTTACAACTCAACCACTGTTTCTGGCGAGTTTACATTTACATACACTACAGATCTGTCTGGACTAGTTACGCTGCCTAGAGAGTGTCTGGATGATACAGTAGAGTGTATCGTTGGGTCAGTACGTACAACCCTACAAGTGACTGACGGCAAGGTGACGCTACCTGACGGCGCTAAGACTGTAACGTTCACCACTAGAGCTAATGTCACAAAACCATCTAAAAATAAGCCAGTATTAAACGCATATGATGGGGTTTTAGGAGTGTTTGACGCTACAAAGAAACATACGTTGCTGGATTTTACCATAGAAAACGGAATCATATCTGACTACAACGCAGGGTCAGCTCCGTATAGTGCAAACCTCATCTATCAGATCAGTAATAGCGGGCAAGCCTCTCTAGGTATTATTTCTGATGGAAAATATTTAGAACTCTCTACCCCTTACGGTTACACAAAGAATAAAGCTCGTGCTGGAGTACAAATACCCGGAGTCGACCTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6d68941e3b7c0fc59b3b39013a99526c598fdc1c53365b9f30d40863360e044f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3692
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50