Protein

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UniProt accession
A0A8S5QHD8 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MASDTLDLGRVRLVHRGAYSASTVYEFFDCVTYNGSSYLCTAAAGSPAGTLPTVTATWALLAQKGDTGAKGTTGAVGQQGVKGDKGDTGATGATGARGATGAKGTSFVLKGAWAANTAYVNNTTQIDVVTYGGSTYACKTGHTSTSSILPTNATYWTLLAQKGATGAKGDKGDTGATGPAGTAGTKGATGATGPQGPKGDTGAGVTAVAINANGHLMVTIGG
Physico‐chemical
properties
protein length:222 AA
molecular weight: 21623,65360 Da
isoelectric point:9,11520
aromaticity:0,06306
hydropathy:-0,12207

Domains

Domains [InterPro]
DC_0876
STR
3–96
DC_0876 IPR003610
IPR003610
CBM
16–61
IPR003610 PTHR24637
G3DSA:2.10.10.20
ATT
20–60
G3DSA:2.10.10.20 IPR008160 G3DSA:2.10.10.20
DC_0876
STR
70–220
DC_0876
A0A8S5QHD8
1 222
Architecture
STR
ATT
STR
ATT
STR
STR 3-19 | ATT 20-60 | STR 61-111 | ATT 112-158 | STR 159-220 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctLgc23
[NCBI] 		2825455 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAE18687.1 [NCBI]
Genbank nucleotide accession
BK015660 [NCBI]
CDS location
range 19850 -> 20518
strand +
CDS
ATGGCAAGCGATACTCTCGATCTCGGTCGCGTCCGTCTCGTGCATAGGGGGGCGTACAGCGCCAGTACCGTTTATGAGTTTTTTGACTGCGTTACATATAACGGCTCATCGTATTTGTGTACGGCGGCAGCCGGGAGCCCTGCCGGGACTCTGCCCACGGTCACGGCGACATGGGCGTTGCTGGCGCAGAAGGGCGATACGGGAGCCAAGGGTACGACCGGAGCTGTAGGACAGCAGGGGGTTAAGGGGGATAAGGGGGACACCGGAGCCACTGGAGCGACCGGAGCCCGGGGCGCGACCGGAGCCAAGGGCACGTCTTTTGTCTTGAAGGGCGCATGGGCCGCAAACACGGCATATGTCAATAATACGACGCAGATCGACGTTGTAACGTATGGCGGCAGCACCTATGCATGTAAAACGGGCCATACGTCAACCAGTTCCATTTTGCCGACGAATGCGACCTACTGGACGTTGCTGGCGCAAAAGGGCGCGACCGGGGCCAAGGGTGACAAGGGCGACACCGGGGCGACAGGTCCGGCTGGTACGGCGGGTACGAAAGGAGCGACAGGAGCCACAGGGCCGCAGGGGCCGAAAGGCGATACGGGCGCTGGCGTCACCGCTGTAGCCATCAACGCCAACGGACATTTGATGGTCACGATAGGAGGCTAG

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0005576 extracellular region Cellular Component IEA:InterPro (UniProt)
GO:0030246 carbohydrate binding Molecular Function IEA:InterPro (UniProt)
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function IEA:InterPro (UniProt)
GO:0005975 carbohydrate metabolic process Biological Process IEA:InterPro (UniProt)

Tertiary structure

PDB ID
2e88f76ce8ecbb315bbfd366d9f8b3749980bc8585073cc7157855ae54afff06
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6642
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50