Protein

View in Explore
Genbank accession
WPK33106.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect2
Probability 0,80
Protein sequence
MATIIQTNGINIGSNCTGVTIVSCSFKGNSNGAVVGSGWNNGDGVKVRTLACIGVGDTPAISRGTTAQRPSAPVSGQQYYDASLGIPIWWNSVSGTWKNAAGADV
Physico‐chemical
properties
protein length:105 AA
molecular weight: 10645,75320 Da
isoelectric point:8,58817
aromaticity:0,06667
hydropathy:0,01429

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK33106.1
1 105
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0368
Central domain 11 94 85 0,5100
C-terminal 95 105 10 0,9974
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-94
C-terminal
95-105

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage AV104
[NCBI] 		3077250 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK33106.1 [NCBI]
Genbank nucleotide accession
OR352935.1 [NCBI]
CDS location
range 23264 -> 23581
strand +
CDS
ATGGCTACTATCATTCAAACCAACGGTATCAACATTGGCTCTAACTGCACGGGTGTTACTATCGTTTCCTGCAGTTTTAAAGGGAATAGTAACGGCGCTGTCGTAGGGTCGGGATGGAATAACGGGGACGGGGTAAAAGTAAGGACGCTGGCATGTATCGGTGTTGGAGATACGCCAGCGATTTCAAGGGGTACTACAGCGCAACGCCCTTCAGCACCTGTAAGTGGTCAGCAGTATTACGATGCGTCCCTGGGGATTCCTATCTGGTGGAACTCAGTTAGTGGCACATGGAAAAACGCAGCAGGTGCTGACGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
50479600a40ff566504d228d6d5543b4b4f73fd1c4f2a66fa8e325aa215c54f3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6238
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A collection of diverse bacteriophages for biocontrol of ESBL- and AmpC-beta-lactamase-producing E. coli Vitt,A.R., Sorensen,A.N., Bojer,M.S., Bortolaia,V., Sorensen,M.C.H. and Brondsted,L. 2023 — GenBank