Protein

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Genbank accession
YP_010741272.1 [GenBank]
Protein name
putative homing endonuclease
RBP type
TSP
Evidence DepoScope
Probability 0,65
Protein sequence
MNATYETIDFSVAMTNQLFTYDSKTGVIRLKSTGCKIGNINTADGGTRIEYNGKTLSGARVAWIIETGNTIPPGFAVVCRQRTPGHYGNRISNLYLVDVARDPNFYA
Physico‐chemical
properties
protein length:107 AA
molecular weight: 11741,13160 Da
isoelectric point:9,03017
aromaticity:0,10280
hydropathy:-0,23738

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010741272.1
1 107
Domain Start End Length (AA) Confidence
N-terminal 1 82 82 0,1252
Central domain 83 96 15 0,0106
C-terminal 97 107 10 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-82
Central
83-96
C-terminal
97-107

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PaulFeyerabend
[NCBI] 		2851979 Uroviricota > Caudoviricetes > Dhillonvirus >
Host Escherichia coli K-12
[NCBI] 		83333 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010741272.1 [NCBI]
Genbank nucleotide accession
NC_073067 [NCBI]
CDS location
range 26993 -> 27316
strand -
CDS
ATGAACGCTACATACGAAACCATCGATTTTTCGGTCGCAATGACTAACCAGCTATTCACCTACGACAGCAAAACCGGAGTCATCCGTCTGAAGTCCACGGGCTGCAAGATTGGCAACATCAACACCGCCGATGGTGGAACACGTATCGAATACAACGGCAAGACACTGTCTGGCGCACGCGTGGCGTGGATTATTGAGACGGGCAATACAATCCCCCCAGGCTTCGCCGTTGTGTGCCGCCAGCGCACTCCAGGGCACTACGGCAACCGCATAAGCAACCTTTACCTGGTAGACGTTGCACGCGACCCGAACTTTTATGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0f58f38f2022603629fe334d47bae8799d95a76b4a4d5e06b24da8fff6d237cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7464
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection Maffei,E., Shaidullina,A., Burkolter,M., Heyer,Y., Estermann,F., Druelle,V., Sauer,P., Willi,L., Michaelis,S., Hilbi,H., Thaler,D.S. and Harms,A. 2021 — GenBank