Protein

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Genbank accession
WYV99892.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAQQVNGWSSETQGLQKRPPTKFIKRLGAPGSWGAKPLVHLVNRDAVEQYYMVFTGGGIAIMDLQGNTYQVRGYDGYANCADPRADLRLITVADYTFVVNRKTVVQMGSELTHAGYRKLGTRALVACRGGQYGRTLTVEVLIDVTWVLLATVVLPNGVGKDQAEAASMVEKVDAQYIIRDMVAQVNVNGAPWKITAAEGPGHMLIHRDDGGEFQGIRTKDGYADQLINGFIYQVQSFNKLPSQAPEGYLVEITGEATRSGDNYWVRYDGLGRVWKETVKPGIIAGVNRNTMPRGLVRAADGQFDWKVLDWNNRASGDNETNPLPSFVDGTINDVFFFRNRLGFLSGENVILSRSSRYFNFFPPSVASLSDDDPLDIAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSQGILSPKTVELDLTTEFDVQDTARPFGIGRGVYFSAPRAAYTSLKRYYAVQDVSDVKNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGAPGLVYIYKFLYMAEDIAQQSWSHWEFGTQVNVLACASIGSYMYLLMDRPEGIVLERMEFTAFTKDFPVEPYRTYIDGKVTTVCSEFDEDLFLSYINLSSLYGGAPGSQESFWTIDTDGVGQQHSPPRGGWQGDPRITLQGDQRGKTYIVGRSYTFLYEFSKFLIKQTADDGTTATEDIGRLQLRRAWLNYESSGSFEINVNNNNGRNTDNDFVYVMAGGRLGAEVRLGELNLGTGQFKFPVTGNAQNQRVTIVSDTPNPLNVIGCGYEGNYIRRSSGI
Physico‐chemical
properties
protein length:807 AA
molecular weight: 89467,37970 Da
isoelectric point:5,46054
aromaticity:0,11029
hydropathy:-0,28996

Domains

Domains [InterPro]
IPR058003
TTP
1–807
IPR058003
WYV99892.1
1 807
Architecture
TTP
TTP 1-807
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYV99892.1
1 807
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9951
Central domain 148 357 211 0,0352
C-terminal 358 807 449 0,1180
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-357
C-terminal
358-807

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-IPa-1
[NCBI] 		3132622 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYV99892.1 [NCBI]
Genbank nucleotide accession
PP496418 [NCBI]
CDS location
range 25154 -> 27577
strand +
CDS
ATGGGTCTGGTTAGTCAGTCCGTAAAGAACCTGAAGGGTGGCATTAGCCAACAGCCGGACATCCTCCGGTTCCCCAATCAGGGTGCGCAACAAGTTAACGGCTGGTCGAGCGAGACCCAAGGTCTTCAGAAGCGACCGCCAACGAAGTTCATTAAGCGTCTCGGGGCACCGGGTTCGTGGGGCGCTAAGCCTCTCGTCCACTTGGTCAACCGTGATGCGGTCGAACAGTATTACATGGTGTTCACTGGTGGTGGCATTGCCATTATGGACCTTCAGGGAAACACCTATCAGGTTCGCGGTTACGATGGTTACGCCAACTGTGCGGACCCTCGGGCCGACCTGCGTCTGATCACTGTGGCTGACTACACGTTCGTTGTGAACCGTAAGACCGTCGTACAGATGGGCAGTGAGCTGACCCACGCTGGTTACCGCAAGCTTGGGACCCGTGCCCTTGTTGCGTGCCGTGGCGGTCAGTATGGGCGGACGCTGACCGTTGAGGTCCTTATCGATGTGACGTGGGTTCTGCTGGCAACAGTGGTACTCCCTAATGGTGTGGGCAAGGACCAAGCCGAGGCTGCATCCATGGTTGAGAAGGTCGATGCTCAATACATCATCCGCGACATGGTTGCTCAAGTGAACGTCAACGGTGCGCCGTGGAAAATCACAGCCGCTGAAGGTCCGGGCCACATGCTGATTCACCGCGATGACGGTGGAGAGTTCCAAGGCATCCGCACCAAGGACGGCTACGCTGACCAGTTGATCAACGGCTTCATCTATCAGGTACAGTCGTTTAACAAGCTGCCCTCTCAGGCCCCTGAAGGTTACCTCGTGGAAATCACCGGGGAAGCCACACGCTCAGGCGACAACTACTGGGTCCGTTACGATGGACTTGGCCGTGTCTGGAAGGAAACCGTTAAGCCGGGGATCATCGCCGGGGTCAACCGTAACACCATGCCTCGTGGTCTGGTCCGTGCGGCTGACGGTCAGTTCGACTGGAAGGTACTCGACTGGAACAACCGTGCGAGCGGTGACAACGAGACCAACCCTCTGCCTTCCTTCGTGGACGGTACGATCAACGACGTGTTCTTCTTCCGTAACCGTTTGGGGTTCCTATCAGGCGAGAACGTGATCTTGAGCCGGTCGAGTCGATACTTCAACTTCTTCCCACCAAGCGTGGCGAGCCTATCCGATGATGACCCTCTGGACATCGCGGTATCCCACAACCGTATTTCGATCCTCAAGTACGCCGTACCGTTCTCTGAACAGTTGCTGCTGTGGTCTGACCAAGCTCAGTTCGTGTTGTCCTCTCAGGGCATCCTGTCTCCCAAGACGGTGGAACTGGACCTGACCACTGAGTTCGACGTGCAGGACACCGCTCGGCCTTTCGGTATCGGACGTGGTGTGTACTTCTCGGCCCCACGGGCTGCCTACACGAGCCTCAAGCGTTACTACGCAGTGCAGGACGTATCGGACGTGAAGAACGCCGAGGACGTATCAGCGCACGTTCCAAGCTACATTGAGAACCGGGTGTTCAATATCCACGGCTCAGGTACTGAGAACTATGTGACCTTGCTGTCTGACGGCGCTCCGGGTCTGGTCTACATCTACAAGTTCCTCTACATGGCTGAAGACATTGCGCAACAGTCGTGGAGCCACTGGGAGTTCGGGACTCAGGTCAACGTGCTTGCCTGTGCTTCGATTGGCTCCTATATGTACCTCCTGATGGATCGCCCTGAAGGGATCGTACTGGAGCGCATGGAGTTCACAGCGTTCACCAAGGACTTCCCTGTGGAGCCGTACCGGACCTACATCGACGGCAAGGTGACAACCGTGTGCAGCGAGTTCGATGAAGACTTGTTCTTGTCGTACATCAACCTGTCCAGCCTGTATGGTGGCGCACCGGGTTCGCAGGAATCCTTCTGGACTATCGACACGGATGGCGTAGGGCAACAGCACTCGCCTCCGAGAGGTGGCTGGCAGGGTGACCCACGGATCACTCTACAAGGTGACCAGCGCGGCAAGACGTACATCGTTGGCCGATCCTACACGTTCCTCTATGAGTTCTCGAAGTTCCTGATCAAGCAAACCGCTGATGATGGGACCACAGCCACTGAGGACATTGGTCGATTGCAGTTGCGACGTGCGTGGTTGAACTACGAGTCTTCGGGTTCGTTCGAGATCAACGTGAACAACAACAATGGCCGCAACACGGACAACGACTTCGTGTACGTCATGGCTGGTGGCCGACTCGGTGCTGAGGTTCGCCTCGGTGAACTGAATCTCGGGACTGGTCAATTCAAGTTCCCGGTAACGGGTAACGCCCAGAACCAACGGGTGACCATCGTGAGCGACACACCGAACCCACTTAACGTGATCGGCTGTGGCTATGAGGGTAACTACATCCGTCGATCCAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7ba78c182402deea12ace8dc3c3a2855a8190564a35c7f1dc7685db2d4c23f6d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2914
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank