Protein

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Genbank accession

QQO90985.1 [GenBank]

Protein name

tape measure protein

RBP type

Evidence RBPdetect

Probability 0,65

Protein sequence

MAKNLKDLMKLSEAELIGMGAQYGLSFNPGMRKRDMAQQLESSAASGWMETNSQLLGEPDSQMYEEESSYGTSDMISDAAHVAQMISGAGLTETFHAAMNGPGHHVEAVHAYMEQLGVSTDDVWMHMPKANPNKPEGHWGMLNSYMRDTLAGHQDIMPELAGHYTGNIMDEYSTNRGDIAKSFGYLAHMYVDREQYDNPDRYARDVYRVAKRLESELPQNFREVAAVSAMNVGNKSGPKLSYMDSLPQLGSESVVGDILHPRQPLNASGLPLGSFGGGIKAEYSLSASLSGSPGWSDVSKTLYQDVSGVVKSAAKVYSGGAERGMNAYRTQSSDRDLILDSASRYADIADVRSGYDNLKKDIGDDPRYSGSSIRGVLENAHQYNEAEVSRTFDPAERLRNAGPTELSPSTEFIAQLDSPTSWNSARSRRESIAISNLDSAPQPAPQEGPIRYHNMEQGTQEWLDFRKQYDITGSTVGSFLGNNEYNRPWAAMVDKIGLQRGKGPSEFTQRMFEAGHRTEEVARNRVAKEFGFDIEQAGAITNDNYPSFMYSPDGLIGDDAIWEHKNPERAKKFSNLSAGEHKDYLDQLQFGMLVSGRSRALFSQTIGDKTVSEWIEKDEGWYERNKDKIDSTIGRLNAGREFVEANSDLSNDDLIKGARAAMTGDGIWKDVKQKSTRGYSAAAGTADDPFIGNRTSAGVGEATASAVGSDSTTGNDLMAVSVKKGILAAQEENKLRGQDADFGGDGGRGGGGFWDTFDASSYGIGGGGSGGGGRGGWNVGGSFSDDFGRAGGALAAGVAGGSIGSLSNGAMNALMMTPWGRVAGMAIGATQIGNEALEGLNDFYGNSLDAGVNNPNEYSSMSQGLEMLGLNQQQAGRLNRTTHSAYNTLLNGDPSGAVNIVQGTRGLITIGDIRAAQGDPVALARVMRERGQERGWSQARIAGAMEMAGLDGMARAYDRTDYSVNEAQENVSRGANSQYADGIAQLGIAQTERAGVLPGYAVPQAAISYGSSFIEAGGDAARVARTASNGLADTTRTVYDFIAGEESGNRDLNADGSVVTSPTGAKGRMQVLDSTSRDPGFGVKPARDNSLEERARVGRDYYDAMLKRYNGDAEKAMAAYTDGAGTVDDAINNHGTNWLNAVPLQAQNRVKKYREWASQGDSIAEGATGFTRNGLSYGQTQATVVNVEVKATVNNKQASATVSTPNGQTVTQTINMGNGAMERR

Physico‐chemical properties

protein length:	1224 AA
molecular weight:	131127,78430 Da
isoelectric point:	5,06995
aromaticity:	0,07435
hydropathy:	-0,57933

Domains

Domains [InterPro]

DC_0169
ATT
1–423

DC_0169 IPR051703 DC_0159 G3DSA:1.10.530.10

IPR011604
STR
443–643

IPR011604 cd00254 DC_0800

IPR011335
Unmapped
451–628

IPR011335 IPR023346

IPR019080
STR
461–597

IPR019080 IPR008258

QQO90985.1

1 1224

Architecture

ATT

STR

RBD

STR

RBD

ATT 1-423 | STR 443-1035 | RBD 1036-1057 | STR 1058-1139 | RBD 1140-1224

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0169	ATT	DC_0169	1	423	Novel HMM	DC_0169	N-terminal	Low	Positional only	46 proteins / 46 hits
IPR051703	Unmapped	-	424	631	InterPro	NF-kappa-B Signaling Regulator	-	-	-	-
IPR011604	STR	IPR011604	443	643	Merged direct domain	PD-(D/E)XK endonuclease-like domain superfamily	Central	Low	Positional only	46 proteins / 46 hits
IPR011335	Unmapped	-	451	628	InterPro	Restriction endonuclease type II-like	-	-	-	-
IPR019080	STR	DC_0765	461	597	InterPro cluster	YqaJ viral recombinase	Central	Low	Positional only	44 proteins / 44 hits
DC_0159	STR	DC_0159	644	1035	Novel HMM	DC_0159	Central	Low	Positional only	48 proteins / 48 hits
G3DSA:1.10.530.10	RBD	G3DSA:1.10.530.10	1035	1166	Merged direct domain	G3DSA:1.10.530.10	C-terminal	Low	Positional only	95 proteins / 95 hits
cd00254	ENZ	DC_0010	1042	1134	InterPro cluster	cd00254	C-terminal	High	Text match	100 proteins / 142 hits
IPR023346	STR	IPR023346	1058	1139	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
IPR008258	ENZ	DC_0010	1059	1136	InterPro cluster	Transglycosylase SLT domain 1	C-terminal	High	Text match	100 proteins / 142 hits
DC_0800	RBD	DC_0800	1164	1224	Novel HMM	DC_0800	C-terminal	Low	Positional only	42 proteins / 42 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Yersinia phage PYps23T [NCBI]	2801356	Uroviricota > Caudoviricetes > Chaseviridae > Carltongylesvirus > Carltongylesvirus PYps23T
Host	Yersinia pseudotuberculosis [NCBI]	633	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

QQO90985.1 [NCBI]

Genbank nucleotide accession

MW147598 [NCBI]

CDS location

range 36466 -> 40140
strand +

CDS

ATGGCTAAGAACTTAAAAGATTTAATGAAGCTATCCGAGGCCGAGCTAATCGGCATGGGTGCTCAATATGGTCTGTCCTTCAATCCCGGTATGCGCAAACGAGATATGGCTCAGCAACTTGAATCAAGTGCTGCGTCAGGTTGGATGGAAACAAATTCACAGCTTTTGGGCGAACCAGATTCCCAAATGTATGAGGAGGAATCCTCTTACGGGACTTCTGATATGATTTCAGATGCAGCACATGTAGCACAGATGATTTCTGGTGCTGGGCTGACTGAAACATTCCATGCTGCAATGAACGGACCAGGACACCATGTAGAAGCAGTTCACGCATACATGGAACAACTTGGTGTATCCACTGATGATGTTTGGATGCACATGCCTAAAGCCAACCCCAACAAGCCGGAAGGACATTGGGGAATGCTTAATTCGTACATGCGAGATACTCTTGCAGGTCATCAAGATATTATGCCTGAACTTGCCGGACATTATACCGGTAATATCATGGACGAATATTCCACAAACCGTGGAGATATTGCCAAGTCGTTTGGTTATCTTGCTCACATGTATGTTGACCGTGAACAGTACGACAACCCAGACCGCTATGCACGAGATGTTTATCGTGTAGCCAAACGTTTAGAATCAGAATTGCCGCAAAACTTCCGAGAAGTTGCTGCCGTATCTGCAATGAATGTAGGAAATAAGTCGGGGCCAAAACTTTCATACATGGATTCATTACCTCAACTCGGTTCTGAATCTGTTGTTGGTGATATTCTGCATCCTCGACAACCTCTTAACGCATCTGGTCTTCCTTTGGGTTCGTTTGGTGGAGGCATTAAGGCTGAATATTCTTTATCTGCATCCTTGTCTGGTTCTCCAGGTTGGTCTGATGTAAGCAAGACGCTCTACCAAGATGTTTCTGGCGTAGTTAAATCTGCGGCAAAGGTTTATTCTGGTGGTGCTGAAAGAGGAATGAATGCGTATCGCACTCAATCTTCTGACAGAGATTTGATTCTTGACTCTGCCTCTCGTTATGCAGACATTGCAGATGTTCGTTCTGGGTATGATAACCTTAAGAAAGATATTGGCGATGACCCTCGATACTCCGGTTCATCTATTCGTGGCGTTCTTGAGAATGCTCACCAGTATAATGAGGCAGAAGTTTCTCGAACATTTGACCCTGCTGAACGTTTAAGAAATGCCGGACCTACTGAATTAAGTCCTTCAACAGAGTTTATTGCACAACTTGATTCCCCAACAAGTTGGAACTCTGCTCGCTCTCGTCGTGAGAGCATTGCTATATCTAATTTGGACTCTGCTCCACAGCCAGCTCCGCAAGAAGGCCCAATCCGTTATCACAACATGGAACAGGGCACTCAGGAATGGTTAGACTTCCGCAAGCAATATGACATTACTGGTTCCACTGTTGGCTCGTTTCTTGGTAACAATGAATACAACCGACCCTGGGCTGCAATGGTTGATAAGATTGGCCTACAACGCGGAAAGGGGCCAAGTGAATTTACTCAACGAATGTTCGAAGCAGGTCATCGGACGGAAGAAGTTGCTCGTAACCGTGTCGCCAAAGAATTTGGATTCGACATTGAGCAAGCTGGCGCAATAACAAATGACAATTATCCGTCGTTCATGTATTCCCCAGATGGTCTTATCGGTGATGACGCGATTTGGGAACACAAGAACCCTGAAAGGGCTAAGAAGTTTTCTAACCTGTCTGCTGGTGAGCATAAGGACTATCTCGACCAACTTCAATTTGGCATGCTTGTATCTGGCCGTAGTCGTGCATTGTTCTCTCAGACAATCGGAGACAAGACGGTATCGGAATGGATTGAGAAGGACGAGGGATGGTACGAACGCAACAAAGATAAGATTGATTCTACTATTGGTCGTCTTAATGCTGGTCGAGAGTTTGTTGAAGCTAATTCAGACTTGTCCAATGATGATTTAATCAAAGGTGCTCGTGCTGCAATGACTGGCGATGGCATCTGGAAAGATGTTAAGCAAAAGTCAACGCGTGGCTACTCTGCCGCTGCTGGTACAGCCGATGACCCATTCATAGGCAACCGTACCAGTGCCGGAGTTGGTGAAGCTACAGCCTCTGCCGTAGGCTCTGACAGCACAACTGGCAATGACCTGATGGCAGTATCTGTCAAGAAAGGTATCCTCGCTGCTCAGGAAGAAAACAAGCTGCGTGGACAAGATGCCGACTTTGGCGGTGATGGTGGTCGTGGCGGTGGCGGCTTCTGGGACACCTTCGATGCAAGCAGTTACGGCATTGGTGGAGGCGGTTCCGGTGGCGGTGGTCGTGGTGGCTGGAATGTTGGTGGCAGCTTCTCAGATGACTTCGGTCGTGCTGGTGGTGCATTGGCTGCTGGCGTAGCTGGTGGCAGCATAGGCTCACTATCCAATGGTGCAATGAATGCCCTCATGATGACCCCGTGGGGACGTGTGGCGGGTATGGCTATTGGTGCTACCCAGATTGGCAACGAGGCTCTCGAAGGTCTGAACGATTTCTACGGAAACTCTTTAGACGCTGGTGTCAATAACCCTAATGAATATTCTTCCATGTCACAGGGCTTGGAGATGTTAGGGCTTAATCAGCAACAAGCTGGCCGACTCAATCGAACCACACATAGTGCCTACAACACCCTCCTAAATGGCGACCCTAGTGGCGCTGTGAACATCGTTCAGGGAACCCGTGGTCTTATCACAATTGGCGACATTCGTGCGGCACAGGGCGACCCTGTAGCCTTAGCGCGTGTAATGCGTGAACGTGGTCAGGAGCGGGGCTGGAGTCAGGCTCGCATCGCTGGTGCTATGGAGATGGCAGGTCTGGATGGCATGGCTCGCGCCTATGACCGTACAGATTACAGCGTGAACGAGGCTCAGGAGAACGTAAGCCGTGGTGCCAACTCACAGTATGCCGATGGTATTGCACAGCTAGGAATAGCGCAGACGGAGCGTGCTGGGGTGCTGCCAGGATACGCAGTCCCGCAAGCTGCAATATCCTACGGGAGTTCATTTATTGAAGCAGGTGGAGATGCAGCCAGAGTAGCGCGTACAGCGTCAAATGGTTTAGCTGATACTACCAGAACGGTATATGACTTTATCGCAGGAGAAGAGTCGGGGAACCGCGATTTGAACGCAGATGGTTCGGTGGTTACATCTCCGACTGGTGCCAAAGGTCGTATGCAGGTTCTTGATTCAACTTCCCGTGACCCAGGATTCGGCGTTAAACCTGCCCGTGATAACTCACTGGAAGAGCGTGCTCGCGTTGGTCGTGACTACTATGATGCAATGCTCAAGCGTTATAATGGTGACGCTGAGAAGGCTATGGCGGCGTATACGGATGGTGCTGGAACTGTTGATGATGCTATCAACAATCACGGAACTAACTGGCTCAATGCTGTTCCTCTACAGGCACAGAACCGCGTCAAGAAGTACCGTGAATGGGCTTCTCAGGGCGATTCTATTGCCGAAGGTGCAACTGGCTTCACCAGAAACGGACTGTCTTATGGTCAGACACAGGCCACTGTAGTTAACGTTGAAGTCAAAGCTACTGTGAACAACAAGCAAGCGTCTGCAACCGTGTCAACTCCGAACGGTCAAACTGTTACCCAAACAATCAACATGGGTAATGGTGCAATGGAACGTAGATAA

Genome Context

Tertiary structure

PDB ID

fb87d1f6cae8270323638dfac23fa54ecdcd99a48e8300991fb2c93a3feb8b65

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3556

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Genome sequence of Yersinia pseudotuberculosis phages	Hammerl,J.A. and Hertwig,S.	2018-05-10	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature