Protein

View in Explore
Genbank accession
QCW20518.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSKLLAIISHSSESVLIFHSSERTLIKHSSESKAKRFRYLIKNRFNYEAVFLFNFVKNKFIMCNENINNIASFDFSQIVDEINWFNNSSNPILTENNKLVLRPDTTISMFSRGLGSIDITNNRLRYKLNFDIFRPTTTGVDTVNFIIQIWNGFNLIGESTVYVDNISVGQIVKYSLDRTYEYDQLTGNVSIKIKTPQGYQNEIRLTKLDVWDFNFCEENVRTYFVFDEFFQNAITAQSAGLRLLKYKVDDVETLTPAFFAHNTVNLGGNPIAQWKYATAEIDGGNRIAATSNQNTFNPFVDEFGLIFDTINSFHGEKPIGTIGSQNFGSGIMNIGFEKPEIYNGLLQRKKGAFFIDIDYTKNLFIECDVVVNQTSSQLFTNPTSFRKYFIIWDAEKCQKQFYFINQIGQNQQPQDQLTNGFLTGITPETKEDTSIPCNGSLNFNGAAGSYSFEINFGTDIGMAGIAYNASHIPDKFEISWNGQTVSTGYVGCNEYNQDLINAGVPMSQINTTPHPGNGAGQLLFNKNSAYPTNAIVTVTGVIGNTGWNISGICPFISNFTEISWNDTNTTEDRTGNDTNETIYNGGVFFPVTNEVWQKNINGAGWVDDSQVVNVTGTFNLVAGINEFRLKAMVGSNAVYSNKLKYTRSNITEPQSGGISFPIHNATELNICIARLSDGGSPITECGVIYNQNTPPTLLDNKIIYDNNLSNECKIFTRPIAGVLYYFTVYYTNSVGTSFIDYPNKI
Physico‐chemical
properties
protein length:745 AA
molecular weight: 83504,52690 Da
isoelectric point:5,17015
aromaticity:0,12617
hydropathy:-0,24711

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QCW20518.1
1 745
Domain Start End Length (AA) Confidence
N-terminal 1 30 30 0,9237
Central domain 31 403 374 0,7166
C-terminal 404 745 341 0,2470
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-30
Central
31-403
C-terminal
404-745

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage FPSV-S18
[NCBI] 		2575346 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium psychrophilum
[NCBI] 		96345 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QCW20518.1 [NCBI]
Genbank nucleotide accession
MK764446.1 [NCBI]
CDS location
range 3856 -> 6093
strand +
CDS
TTGTCAAAATTATTGGCCATCATATCGCATTCTTCGGAAAGCGTCCTAATATTTCATTCTTCGGAAAGAACTTTAATAAAGCATTCTTCGGAAAGCAAGGCAAAAAGATTTCGCTATCTTATAAAAAACCGTTTCAATTATGAAGCGGTTTTTTTATTTAACTTTGTCAAAAATAAATTTATTATGTGTAACGAAAATATAAACAATATTGCATCATTCGATTTTTCGCAAATTGTTGATGAAATAAATTGGTTCAACAATTCATCGAATCCAATTTTAACAGAAAACAACAAACTTGTTTTGAGACCCGACACAACAATTTCAATGTTTAGTCGTGGACTTGGTTCAATTGACATCACAAACAATCGTTTACGATATAAATTGAATTTTGATATTTTCAGACCAACAACAACGGGTGTTGATACTGTAAATTTTATTATTCAAATATGGAACGGTTTTAATTTAATCGGCGAATCAACCGTTTATGTTGATAATATTTCAGTCGGTCAAATTGTGAAATATAGTTTGGATCGAACGTATGAATATGACCAATTGACCGGAAATGTTTCAATAAAAATCAAAACGCCGCAAGGTTATCAAAACGAAATTCGATTGACAAAACTTGATGTTTGGGATTTTAATTTTTGTGAAGAAAACGTGCGAACGTATTTTGTTTTTGATGAATTTTTTCAAAATGCAATCACGGCACAAAGCGCCGGATTAAGATTGTTGAAATATAAAGTTGATGATGTTGAAACATTGACACCGGCATTTTTCGCACACAACACGGTTAATTTGGGCGGAAATCCAATTGCACAATGGAAATATGCAACGGCGGAAATTGACGGCGGAAATCGTATTGCAGCAACTTCAAATCAAAATACATTCAATCCATTTGTTGATGAATTTGGTTTGATATTTGACACGATTAATTCATTTCACGGCGAAAAACCAATTGGCACAATCGGAAGTCAAAATTTTGGTTCCGGAATAATGAACATCGGTTTTGAGAAACCAGAAATATACAATGGACTTTTGCAAAGAAAAAAAGGCGCTTTTTTTATTGATATTGATTATACAAAAAATTTATTCATCGAATGTGATGTTGTTGTTAATCAAACAAGTTCACAACTTTTCACAAATCCAACTTCATTTCGTAAATATTTCATTATTTGGGACGCCGAAAAATGTCAAAAACAATTTTATTTCATCAATCAAATTGGTCAAAATCAACAACCGCAAGATCAATTGACAAACGGTTTTTTAACTGGAATAACACCAGAAACAAAAGAAGACACATCAATTCCTTGCAACGGTTCATTAAATTTCAACGGTGCGGCTGGTTCGTATTCATTTGAAATAAATTTTGGCACGGATATTGGAATGGCCGGCATTGCATACAATGCTTCGCATATTCCGGACAAATTTGAAATATCGTGGAATGGTCAAACGGTTTCAACTGGTTATGTTGGTTGTAATGAATACAATCAAGATTTAATTAATGCGGGTGTTCCGATGTCTCAGATAAATACAACGCCACATCCTGGAAACGGTGCCGGACAATTATTGTTCAATAAAAATTCGGCATATCCAACAAATGCGATTGTTACAGTTACGGGCGTGATTGGAAACACTGGTTGGAATATTTCTGGAATATGTCCGTTTATTTCAAATTTTACAGAAATATCTTGGAACGACACTAACACAACAGAAGATAGAACCGGAAACGATACGAATGAAACAATTTACAATGGCGGTGTTTTCTTTCCTGTAACAAATGAAGTTTGGCAAAAAAACATCAACGGAGCTGGTTGGGTTGATGATTCGCAAGTTGTAAATGTAACCGGCACGTTTAACTTGGTTGCGGGTATAAATGAATTTAGATTGAAAGCAATGGTTGGTAGTAACGCCGTATATTCAAATAAACTAAAATATACACGAAGTAATATTACAGAACCACAATCCGGCGGAATAAGTTTCCCGATACACAATGCGACTGAATTAAATATTTGTATTGCACGTTTGAGTGATGGCGGAAGTCCTATAACAGAATGCGGCGTAATATACAATCAAAACACACCTCCAACGCTTTTAGATAATAAAATTATTTATGACAATAATTTGTCAAATGAGTGCAAAATATTTACAAGGCCAATTGCAGGTGTTTTATATTATTTTACTGTATACTATACTAATTCCGTAGGCACTTCTTTCATTGATTATCCAAATAAAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2d569d348b5baef6fbd988db9cc920bf907a5b0eaa1753f02cc049567ed3ad79
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5477
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Host range and genomic characterization of Flavobacterium psychrophilum phages Castillo,D. Sr., Jorgensen,J., Sundell,K. and Middelboe,M. 2014-02-21 — GenBank