Protein

View in Explore
Genbank accession
XYM48757.1 [GenBank]
Protein name
tail assembly protein
RBP type
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAIKSSPGMISGMQPLNTITGEEFVEVIRLEADGSYKNFRLMVSKIRNNEGLSAYEVAVKNGFVGTETEWLESLKGQGIYQLALQQGFVGTEDEFLASLKGEDGADGAVGKSIYEVAVDNGFTGTEQEFLATLVGKSAYQSALDTGFTGTEAEFIQSLKGDKGDAGEKGDKGDKGDQGDQGKSAYDLAVEAGFTGTEAEYLESLHGIDGTKGDDGIDGADGKSAYELAVAAGFVGTEEEYLESLHGADGKSAYQIARDNGFVGTEEQWLESLEGANGKSAYESAVDGGYVGTEEEFNLSLAEPKGVNGGVFITDITPVNAADNVGEKVKSADSFSLVQCSSSTRDVKVKVAAITGHTNYRPVVKVNGVDVSLVAGANAPMWTGEVTINLPEPVGSDPIKVEAVHEDGAKASTDVIMDTAPVVTAATFTGEYPGSQTELKAGDTMSITFTTDQDVVGYEIRDEGAFVARNGTLTAGKTHSLTGLVIADRGNTATNQPFSIRVKKASGSFSAWYKSDVAGTTEKVNVVKLNNLKPTITFGAVTYPAGQTAIKAGEDATVANTVTNATSATYTSANGQLTVTNPTQIEANKTVSYLTGNYNDLTNNLTITAQRAANGSSSTASTIVKIANGAPELTVTTPATRLRSGGNAGTVVQRHTITITSTQSLAEAPVMTAPGGNWDSAGWVGDAAKKVWTRTLLVHDDDAKGIFNFTDVVAKGLAGVTVNTLKAGGEYTLGGFVLRTMSIAAFPNREGAIGTDVVMTGKLRCTNLSKGASGSLNFTYKADDADAVNTYTIKNSNSWYNCDAANAVSNTSGLMRVELEEVV
Physico‐chemical
properties
protein length:822 AA
molecular weight: 85864,90790 Da
isoelectric point:4,62717
aromaticity:0,07056
hydropathy:-0,23066

Domains

Domains [InterPro]
DC_1725
STR
17–79
DC_1725 DC_1967 DC_1967 DC_1725
DC_1967
ATT
75–100
DC_1967 DC_1725 DC_1967
XYM48757.1
1 822
Architecture
STR
ATT
STR
ATT
STR
STR 17-74 | ATT 75-136 | STR 137-166 | ATT 167-250 | STR 251-277 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage phiHQ
[NCBI] 		3402740 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM48757.1 [NCBI]
Genbank nucleotide accession
PV029745 [NCBI]
CDS location
range 156021 -> 158489
strand -
CDS
ATGGCCATTAAATCCAGTCCGGGTATGATCTCCGGAATGCAGCCTCTTAACACCATCACAGGTGAAGAGTTTGTAGAAGTTATCCGTCTTGAGGCAGATGGTTCTTATAAGAACTTCCGTCTCATGGTTTCTAAAATCCGTAACAATGAAGGCCTATCGGCTTATGAAGTTGCGGTAAAGAATGGTTTCGTAGGCACTGAAACTGAGTGGCTCGAAAGTCTAAAAGGTCAAGGTATTTATCAGCTGGCTCTTCAACAGGGCTTCGTAGGTACTGAAGACGAATTCCTCGCCTCTCTTAAAGGTGAAGACGGCGCAGATGGCGCTGTAGGTAAATCCATCTATGAAGTTGCCGTAGATAACGGCTTCACTGGCACTGAACAAGAATTCCTTGCAACTCTCGTCGGTAAGTCTGCCTATCAATCCGCTCTTGATACTGGTTTTACCGGTACCGAGGCCGAGTTCATCCAGTCCCTAAAAGGTGACAAAGGCGATGCCGGCGAGAAAGGTGATAAGGGTGACAAAGGCGACCAGGGTGATCAAGGTAAGTCCGCTTACGATCTAGCTGTCGAAGCTGGTTTCACTGGAACCGAAGCTGAGTACTTGGAATCTCTCCACGGTATCGACGGTACTAAAGGTGATGACGGTATCGATGGCGCTGACGGCAAATCTGCTTACGAGCTAGCCGTAGCAGCCGGTTTCGTTGGTACTGAAGAAGAATATCTCGAAAGCCTACACGGAGCTGATGGTAAGTCTGCTTATCAGATCGCTCGTGATAATGGATTCGTCGGTACTGAAGAACAATGGCTGGAAAGCCTAGAAGGCGCTAATGGTAAGTCCGCATACGAATCCGCTGTTGATGGTGGATACGTTGGTACTGAAGAAGAATTTAACCTGTCGCTTGCCGAACCGAAAGGTGTAAATGGTGGCGTATTCATCACTGATATCACTCCGGTTAATGCCGCTGATAACGTCGGTGAGAAGGTTAAGTCCGCGGATAGTTTCTCTCTGGTGCAATGTTCTTCGTCTACTCGTGACGTTAAAGTTAAAGTGGCTGCTATTACCGGTCATACTAACTATCGTCCTGTCGTTAAAGTTAACGGCGTAGATGTATCTCTCGTCGCTGGTGCAAATGCCCCGATGTGGACCGGTGAAGTAACTATTAATCTGCCTGAGCCGGTTGGTAGTGATCCCATTAAGGTCGAAGCTGTTCACGAAGATGGTGCTAAGGCATCTACTGATGTAATCATGGATACCGCGCCGGTTGTAACTGCGGCTACATTTACAGGTGAATATCCTGGTTCTCAAACCGAGCTGAAAGCAGGCGACACAATGTCGATCACTTTCACCACTGACCAAGATGTGGTAGGTTATGAGATTCGTGATGAAGGTGCATTCGTAGCACGCAATGGTACACTGACCGCTGGTAAGACTCACAGTCTGACTGGTCTGGTTATTGCTGACCGTGGTAACACTGCTACTAACCAACCGTTCAGTATCCGCGTTAAGAAAGCCTCCGGTAGTTTCTCCGCGTGGTATAAGTCCGACGTAGCTGGTACTACTGAGAAAGTCAACGTTGTCAAGCTGAACAACCTGAAACCGACGATTACATTCGGTGCTGTAACTTATCCGGCTGGTCAAACTGCCATTAAAGCTGGTGAAGATGCAACCGTTGCTAACACTGTAACTAACGCTACTAGCGCTACTTACACCTCGGCTAATGGTCAGCTGACTGTAACTAACCCGACTCAGATTGAAGCAAACAAAACTGTTTCTTACCTGACTGGTAATTACAACGACCTGACTAATAACCTGACAATCACTGCACAACGTGCTGCTAACGGTAGTTCGTCTACTGCATCGACAATCGTTAAGATTGCTAACGGTGCCCCTGAACTGACTGTTACCACTCCTGCCACTCGTCTGCGCTCTGGTGGTAATGCAGGTACTGTTGTACAGCGTCACACCATCACTATCACTTCGACTCAATCGCTGGCTGAAGCCCCTGTGATGACTGCTCCTGGCGGTAACTGGGATTCTGCTGGTTGGGTGGGTGATGCAGCTAAGAAAGTATGGACACGCACACTGCTCGTTCATGATGATGATGCTAAAGGTATCTTCAACTTTACCGATGTTGTAGCCAAAGGTCTGGCTGGCGTTACAGTCAATACCCTTAAAGCTGGTGGCGAGTATACCCTTGGTGGCTTCGTTCTTCGTACCATGTCTATCGCTGCTTTCCCGAATCGTGAAGGTGCTATTGGTACAGATGTAGTTATGACTGGTAAACTTCGCTGCACTAATCTGTCTAAGGGTGCTAGCGGTTCTCTTAACTTCACCTATAAAGCTGACGATGCTGATGCTGTAAATACTTACACCATCAAGAATAGCAATAGTTGGTATAACTGCGACGCAGCTAACGCTGTATCTAACACATCCGGTCTGATGCGCGTCGAACTTGAGGAAGTTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1524a854aa6c42dbff52fb9485463cf8419ee31b42b2dd9aae928b71d23b5c2a
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3744
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome Characterization of Phikzvirus realted Pseudomonas phage phiHQ: A Promising Candidate Against Uropathogens Qamar,H., Khan,M.S.I., Afzal,S. and Malik,K. 2022-09-14 — GenBank