Protein

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Genbank accession
AXG66485.1 [GenBank]
Protein name
putative membrane protein
RBP type
TSP
Evidence RBPdetect
Probability 0,84
Protein sequence
MEIIRLPIYTSNVPIPAEGKRPSDEPPVKYGLENIVHTVAAANIPDPQNIVVSEGTTLTAIGATAQFNLTTFNNCYPISWLNTGTNKLKFRVKALLSASFIGTVDSFLSLYNCIVINTNIGSTPYGGFLVLTIGKEGSGADLILSDANFLNGKFYASVNRVSGEF
Physico‐chemical
properties
protein length:165 AA
molecular weight: 17705,99550 Da
isoelectric point:5,75770
aromaticity:0,09697
hydropathy:0,17030

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXG66485.1
1 165
Domain Start End Length (AA) Confidence
N-terminal 1 16 16 0,9800
Central domain 17 154 139 0,0079
C-terminal 155 165 10 0,9941
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-16
Central
17-154
C-terminal
155-165

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA13
[NCBI] 		2283030 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG66485.1 [NCBI]
Genbank nucleotide accession
MH460460 [NCBI]
CDS location
range 50449 -> 50946
strand -
CDS
GTGGAAATAATTCGTCTTCCCATTTACACGTCTAACGTGCCTATTCCGGCAGAAGGTAAGCGTCCATCCGACGAACCGCCTGTTAAGTACGGTCTTGAAAATATCGTTCACACGGTTGCCGCTGCGAATATTCCCGATCCTCAAAACATCGTTGTAAGTGAAGGAACAACGCTGACTGCAATCGGTGCTACTGCGCAATTCAATCTGACAACTTTCAACAACTGCTATCCTATTTCGTGGTTGAATACGGGAACGAATAAATTAAAGTTTCGCGTGAAGGCTCTTTTGTCTGCAAGTTTTATTGGAACCGTTGATTCGTTTCTCAGTCTGTATAACTGCATCGTGATTAACACTAACATCGGATCAACTCCTTACGGTGGTTTCTTAGTGCTCACGATTGGCAAAGAAGGAAGCGGTGCGGATTTAATTTTGTCGGACGCGAATTTTCTTAACGGGAAATTCTATGCTAGTGTCAATCGCGTATCAGGGGAATTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4123f155807eb3057800a3a62313cc49ed4c23f1630fb17c60eb36ad0f81d3fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3081
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank