Protein

View in Explore
Genbank accession
YP_009888728.1 [GenBank]
Protein name
haemolysin-type calcium binding
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVTGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPHAPSSNLLEGRGYLINNTTGTSTVVLPSPTRIGDSVTICDAYGKFATYPLTVSPSGNNLYGSTEDMAITTDNVSATFTWSGPEQGWVITSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFSPSLPANTELQVIEYTPIQLGNGGGSGSSTITWVYNGGSAIGGETEITLDIVVDDVPAIDINGSRQYKNMGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDYTLREVARVTNVKDTEVVYFSVGAVLSGYKVIYDKVTQRSYFIPELPTGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYITLSGTFDSGAVINTKNELLTHTDGKYRWDGALPKTVDAGSTPETSGGIGFGSWVGVGDASLRSDLNSTNGAGIVKTGNGNTVQETFDFIKNVQQTNLHPFVPSGNFGSGLPFDSSLQVFKYNDEYYSYKGPIVPGSIVPATPSVDSNWKKEPVSDYIENYGGGVHVADQTPAIMAAISAGVRRIIFPKGELRMSQCDIPEYTQGLTFEGQGANQAYTGTTVIKPLNDNQNCLFNSGVNQHGQDSIKFKNIQFDGEWRCNHAILHESGAGWYYEKLTGKNFNTWVIYDDQGLTVMRDVYTEATSSDLTKRATGGCIRIYSDSVMDTVNCYGGSVPLWIAAGGNRITNIWANGGYDVGAIRLMPKNDSTNHINTAMSNLYIGESTNESGTAIPVLELQGNSIRRVSGVQISNAHFVHADLTLNTNMVMIRTDKVDGFVMSSFDVLGRGEYSSASSRTYNFLNATDSTGMAFSAGSVRGINNNPIVLSSGSRLAIDAVEFDGWSTNSDSGIENKAAIRSSGAGTRCCIGSSCAFNASQADAYAVYAGDEFAVDISILNLNYPSSNIIIPANTNYSYMYKRPGGKLTLVNTLTI
Physico‐chemical
properties
protein length:1013 AA
molecular weight: 108471,06890 Da
isoelectric point:4,69174
aromaticity:0,09181
hydropathy:-0,20168

Domains

Domains [InterPro]
DC_1946
ATT
1–694
DC_1946
G3DSA:3.30.2020.50
ATT
335–420
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
RBD
416–481
IPR040775
YP_009888728.1
1 1013
Architecture
ATT
ATT 1-694 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009888728.1
1 1013
Domain Start End Length (AA) Confidence
N-terminal 1 593 593 0,9963
Central domain 594 992 400 0,9893
C-terminal 993 1013 20 0,6748
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-593
Central
594-992
C-terminal
993-1013

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage moki
[NCBI] 		2713306 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009888728.1 [NCBI]
Genbank nucleotide accession
NC_049506 [NCBI]
CDS location
range 5961 -> 9002
strand +
CDS
ATGGCCAACAAACCAACACAGCCTCTTTTCCCTTTGGGTTTAGAAACTTCTGAGTCTTCGAACATAAAAGGCTTCAACAACTCCGGCACTATTGAGCATTCCCCTGGTGCCGTAATGACATTTCCTGAAGATACTGAAGTTACAGGTCTTCCATCTTCTGTGCGTTACAATCCTGATAGTGATGAATTTGAAGGTTATTACGAAAACGGTGGTTGGTTGTCTTTGGGGGGCGGTGGAATACGCTGGGAAACGCTCCCTCACGCTCCCTCTAGCAATTTGTTAGAAGGTCGTGGCTATCTCATTAATAATACCACAGGGACATCTACAGTGGTTCTCCCTTCCCCTACGCGTATTGGGGATTCCGTTACTATTTGTGATGCTTATGGGAAATTTGCCACTTACCCATTGACCGTGTCTCCTTCTGGAAATAATTTGTATGGCTCCACTGAAGACATGGCTATAACAACTGATAACGTATCAGCAACGTTTACTTGGTCTGGACCTGAACAAGGTTGGGTTATCACATCCGGCGTCGGTCTTGGTCAAGGCCGTGTCTACAGTCGTGAAATCTTTACACAAATTTTGGCGTCTGAAACAAGTGCTGTCACTCTCAATACTCCACCAACAATCGTGGACGTGTATGCTGACGGAAAACGTCTTGCGGAATCCAAATATTCATTAGATGGGAATGTAATCACTTTCAGTCCTTCTTTGCCAGCCAACACAGAACTTCAGGTGATTGAATATACTCCGATTCAATTGGGTAATGGCGGTGGTTCTGGTTCTTCTACGATTACCTGGGTCTATAATGGGGGTTCAGCGATTGGCGGTGAAACCGAAATCACGTTAGACATCGTTGTTGATGATGTTCCGGCCATTGATATAAACGGAAGTCGCCAGTATAAAAATATGGGGTTCACATTCGATCCATTAACCAGTAAAATCACTCTTGCACAAGAACTGGATGCAGAGGATGAAGTTGTTGTAATTATCAATGGAACGCCAAACATCTATAATCAAATTGATTATACTTTGCGGGAAGTGGCTCGTGTAACCAATGTTAAAGATACAGAGGTCGTTTATTTTAGTGTTGGTGCTGTGTTAAGCGGGTATAAAGTTATCTATGATAAAGTAACACAGAGATCATATTTTATTCCAGAGTTACCGACTGGAACCACGGCAGTCAGCCTTAGTTCTTCGGCTGTGCTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTATCTCGTGAAGAATATATTACATTGTCTGGGACATTTGATTCTGGTGCTGTCATCAATACTAAAAATGAATTACTCACCCATACGGACGGTAAGTATCGTTGGGATGGGGCATTACCTAAAACTGTCGATGCTGGATCAACGCCCGAAACATCTGGGGGTATTGGGTTTGGATCGTGGGTGGGTGTTGGTGATGCTTCTTTAAGATCTGATTTGAATTCGACAAATGGGGCTGGAATTGTAAAAACTGGAAATGGGAATACTGTACAAGAAACATTTGATTTTATAAAAAATGTTCAACAAACAAATCTACATCCTTTTGTTCCTTCAGGCAATTTTGGTTCTGGACTTCCTTTTGATTCTTCGTTACAGGTATTCAAGTATAATGATGAATATTACTCATACAAAGGACCTATTGTCCCAGGTTCGATAGTTCCGGCAACCCCATCCGTTGACTCAAACTGGAAAAAAGAACCTGTTTCTGATTACATAGAAAATTACGGTGGTGGTGTGCATGTAGCTGATCAGACTCCTGCAATTATGGCGGCTATATCTGCTGGTGTTCGCCGTATCATATTTCCTAAAGGTGAACTTAGAATGTCTCAGTGTGATATTCCAGAATACACACAAGGCCTCACGTTTGAAGGGCAAGGTGCCAATCAGGCGTACACCGGAACAACAGTGATCAAACCGTTAAATGATAATCAAAATTGTTTATTTAATTCTGGCGTAAACCAGCACGGACAGGATTCTATAAAATTTAAAAACATTCAATTTGACGGAGAATGGCGTTGCAACCATGCAATATTGCATGAGTCTGGAGCTGGTTGGTACTATGAAAAACTGACAGGTAAAAATTTCAATACATGGGTTATCTACGATGATCAGGGTTTGACTGTAATGCGTGACGTTTATACCGAAGCAACCAGTTCAGATCTGACGAAAAGAGCTACAGGTGGATGTATCCGTATATACTCAGATTCTGTAATGGATACCGTAAACTGTTATGGAGGAAGTGTTCCACTATGGATTGCTGCTGGCGGAAACCGAATTACTAATATCTGGGCAAATGGTGGGTATGATGTTGGCGCAATACGTTTGATGCCAAAGAACGACAGTACTAACCATATCAACACTGCCATGAGCAATCTCTATATAGGTGAAAGTACAAACGAATCAGGCACTGCTATTCCTGTATTAGAACTACAAGGTAACTCAATTCGTCGCGTATCTGGTGTTCAGATTTCAAATGCACATTTTGTGCATGCTGACTTGACTCTCAATACAAACATGGTGATGATACGAACCGATAAAGTTGATGGTTTTGTGATGTCATCTTTTGATGTTCTTGGACGAGGCGAGTACAGTTCTGCAAGCAGTCGCACATATAATTTCTTAAATGCGACAGATTCTACCGGAATGGCTTTTTCTGCCGGAAGTGTAAGAGGTATTAATAATAACCCAATAGTTTTATCATCAGGGTCTAGGTTAGCTATTGATGCCGTTGAATTCGATGGGTGGAGTACGAACTCTGATTCAGGTATAGAGAATAAAGCTGCTATACGTTCATCTGGTGCTGGAACAAGGTGCTGTATTGGTAGCTCATGTGCTTTCAATGCTTCGCAAGCGGATGCTTACGCTGTGTATGCAGGGGATGAATTTGCAGTTGATATTTCTATTCTTAATCTTAACTATCCTAGTAGCAATATAATAATTCCTGCAAATACAAATTACAGTTACATGTATAAGCGACCAGGCGGAAAATTAACCTTAGTCAACACATTGACAATTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cbb7ba8eb8abc1198f8e6555f2d0b72125849cd24cec48cb43f6ef2667abe084
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2805
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50