Protein

View in Explore
Genbank accession
XYM57056.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,76
Protein sequence
MSFYQELKTAKAAAIGTIMPFTGNISDIPDGWIPCDGSTVSASDFPLLARAIGDTYNLSTAVTQGLIDQFTNNASTETGRTPATYVYSPLDGNGGGATFAIVVADAGTQAGGAPNGVGGPVTITRLTQGINYQVGDNLTIPSGQSGGGTDIIITVSSVETGSVSTFGGEFPNYLGEIVLPNLLNKPIVDLETNYFGSGSVLPAANMPAFHDPVTVAEVVPYIGANADSGVPQTFNDVVTDVVFELNERTTFPTGGGEVAYYYSGTLAGNTLVSGSGEGSKIMFFGPRKLGRNHLKSHRHSGRFQTVRKDPSSQPGEGVIPWSTLSFTFEAQVETSDGSIFVTDDNSFTLSWEMNQYDRGRSGFGGGLDGRIVAFIHAENPPVNWTPKNVVWSPIKSELSQPHNHKNFNEGVGTLKGMLTGTGGIAGFNKGDGSAQTVKYGIAGNELNLPAGQTNWYPDLIEYIGGTNNALSNKDSFENHNVGGTQTMNSNAGWDFNRTANTTGRVDMIQAHTHDEVDIEFDRSGLRPLNRIEIDVSAPNPDTSSGSLIGIDLDNARNVGVFQINFNTSQPQMSCIYCIRAY
Physico‐chemical
properties
protein length:581 AA
molecular weight: 61639,35350 Da
isoelectric point:4,70942
aromaticity:0,08950
hydropathy:-0,26110

Domains

Domains [InterPro]
DC_1651
STR
1–228
DC_1651
IPR037053
ATT
5–68
IPR037053 DC_0344
SSF88874
STR
9–62
SSF88874
IPR011083
ATT
16–64
IPR011083
XYM57056.1
1 581
Architecture
ATT
STR
ATT 1-68 | STR 69-581
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH11
[NCBI] 		3413211 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM57056.1 [NCBI]
Genbank nucleotide accession
PV340848.1 [NCBI]
CDS location
range 35062 -> 36807
strand +
CDS
ATGTCTTTTTATCAGGAACTTAAAACTGCCAAAGCAGCTGCTATTGGCACGATCATGCCATTCACGGGGAATATCTCGGATATCCCCGATGGATGGATTCCCTGTGATGGATCTACAGTAAGTGCTTCTGATTTTCCTTTGCTAGCAAGAGCAATTGGTGACACCTATAATCTATCTACTGCAGTCACACAAGGATTGATTGATCAATTCACTAACAATGCTAGTACAGAGACAGGTAGAACCCCAGCAACTTATGTTTATTCTCCTCTAGATGGAAATGGTGGTGGTGCTACTTTTGCTATTGTTGTTGCTGACGCTGGCACACAAGCAGGTGGAGCACCTAACGGAGTTGGTGGTCCTGTAACTATTACTAGACTTACTCAAGGTATTAATTATCAGGTTGGTGATAACCTAACTATTCCTTCGGGACAATCTGGCGGTGGTACAGATATTATTATCACAGTCAGTTCAGTCGAAACTGGGTCAGTTTCTACATTTGGTGGAGAGTTTCCAAATTATCTTGGCGAAATTGTTTTGCCTAATTTGCTCAATAAACCAATTGTTGACCTAGAGACAAATTATTTTGGTAGTGGTTCTGTTTTGCCAGCGGCAAATATGCCAGCGTTTCACGATCCTGTAACAGTTGCAGAGGTTGTTCCTTATATTGGAGCGAATGCTGATAGTGGTGTTCCTCAGACCTTTAATGATGTTGTTACTGATGTGGTCTTTGAATTGAATGAAAGAACTACATTCCCCACAGGTGGTGGAGAAGTTGCATATTATTATAGTGGAACTCTGGCAGGTAATACACTTGTTTCTGGTTCTGGTGAGGGTTCAAAGATTATGTTCTTTGGACCTAGAAAACTAGGTAGAAATCACTTGAAGAGTCACCGCCACTCTGGTAGATTTCAGACAGTTAGAAAGGATCCATCTTCACAACCAGGCGAAGGTGTTATTCCATGGTCTACTCTTAGCTTTACATTTGAAGCACAGGTTGAAACAAGTGACGGATCTATCTTCGTTACGGATGATAACTCATTCACTCTATCTTGGGAAATGAATCAATATGATAGAGGTAGAAGTGGATTTGGTGGAGGACTTGATGGAAGAATTGTAGCATTCATCCACGCAGAAAACCCACCTGTTAACTGGACACCAAAAAATGTTGTTTGGTCTCCAATTAAATCCGAACTATCGCAACCACATAACCATAAAAACTTTAATGAAGGCGTTGGTACTTTGAAGGGAATGCTGACTGGTACAGGCGGTATTGCTGGTTTCAATAAGGGTGATGGTTCTGCACAGACAGTTAAGTATGGTATTGCTGGAAATGAACTAAATCTTCCTGCTGGACAAACAAACTGGTATCCAGACCTCATTGAATATATTGGTGGCACTAACAATGCACTATCCAATAAAGATTCGTTTGAAAACCACAATGTTGGTGGAACTCAGACAATGAATAGTAATGCTGGTTGGGATTTCAATAGAACTGCAAATACAACTGGTAGAGTTGATATGATTCAAGCACATACTCATGATGAGGTTGATATTGAGTTTGATCGTTCTGGTCTAAGACCATTAAATAGAATTGAGATTGACGTTAGCGCACCTAATCCAGACACATCTTCTGGATCTTTGATTGGTATTGATCTTGATAATGCTAGAAATGTTGGAGTTTTCCAAATTAATTTTAATACTTCTCAACCACAAATGTCCTGCATCTATTGCATCAGAGCATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f5cf340f60d4ddf1583d665d2ba77e034045470c09230f32ba33b83c734b69d3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4829
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Cyanophage Infections in a Sponge Intracellular Cyanobacterial Symbiont Peretz,T., Cattan-Tsaushu,E., Conti,C., Rosental,B., Steindler,L. and Avrani,S. 2025 40696756 GenBank