Protein

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Genbank accession
YP_010678583.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MYYSLMRESKVIVEYDGRAYHFDALSNYDINTSYEEFKTLRRTIHRRTNYADSVINAQTPSSISLAINFSNTLTEANFFEWMGFDREGTTFLLPLYSTNIEPIMFNIYIVNKDNNCVYFENCFVSNVDFSLDKNVPVLNVGIESGKFSEVSTFPPAGIVQGEVMSYSPPRVTTNSNVLPALLSASMSFQQQCSWREDKSVFDINKIYNNKRAYVNEMNSSATIAFYYTKRFAGDMFYNIEPETDIPLTIRNEHISVDFPSARITKRLQFSDLYRIEWDVIPTADSDPVRIDFFGEIKK
Physico‐chemical
properties
protein length:298 AA
molecular weight: 34436,32860 Da
isoelectric point:4,97798
aromaticity:0,14094
hydropathy:-0,30067

Domains

Domains [InterPro]
IPR056389
ATT
1–297
IPR056389
YP_010678583.1
1 298
Architecture
ATT
ATT 1-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010678583.1
1 298
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,9027
Central domain 11 209 200 0,0752
C-terminal 210 298 88 0,5401
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-298

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_STy-RN29
[NCBI] 		2910950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010678583.1 [NCBI]
Genbank nucleotide accession
NC_071038 [NCBI]
CDS location
range 9346 -> 10242
strand +
CDS
ATGTACTACTCTCTAATGCGAGAGTCAAAAGTTATAGTTGAGTATGATGGCAGAGCGTATCACTTTGACGCTCTGTCAAATTATGATATTAATACCTCCTACGAGGAATTTAAAACTCTTCGTAGGACTATTCATCGTAGAACCAACTATGCTGACTCTGTTATTAACGCACAAACTCCATCATCAATATCGCTGGCTATAAATTTTAGTAATACCCTTACTGAGGCTAACTTCTTTGAATGGATGGGCTTTGATAGAGAGGGTACTACCTTCCTGCTACCACTTTATAGCACGAATATTGAACCAATAATGTTTAATATATACATAGTTAATAAAGATAATAACTGTGTATATTTTGAAAACTGTTTTGTATCTAACGTTGACTTTTCTCTTGATAAAAACGTCCCAGTGCTGAATGTTGGTATTGAGTCTGGTAAGTTTTCTGAGGTATCCACATTTCCTCCTGCTGGTATTGTTCAGGGTGAGGTTATGTCTTACAGCCCTCCTAGAGTAACTACAAACAGTAATGTTTTACCTGCTCTTTTATCCGCTTCTATGTCCTTCCAACAGCAATGCTCTTGGAGAGAAGATAAAAGTGTATTTGACATAAACAAAATATATAATAATAAAAGAGCTTATGTTAATGAGATGAATTCGTCAGCAACAATTGCGTTTTACTACACCAAGCGATTTGCTGGTGATATGTTCTACAATATTGAACCTGAAACTGACATCCCTTTAACTATCCGAAATGAGCATATTTCGGTTGATTTCCCTTCAGCACGTATAACAAAACGCCTACAATTCTCGGATTTGTATAGGATTGAGTGGGATGTAATTCCTACTGCTGATTCTGATCCGGTAAGAATCGACTTCTTTGGAGAAATAAAGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d37929a28007aa48abab470db99d95a9aaf6db1bc77785e5dad05fc168dca89b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8517
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of Salmonella phage vB_STy-RN29 Imklin,N. and Nasanit,R. 2022-01-10 — GenBank