Protein

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Genbank accession
YP_010738282.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MGGKSKKQTVGYKYYLGMHLALCHGPIDAITRLRVDDRDAWTGKNTGGTINVNAADLFGGEKREGGVSGSIDVAMGGPAQGQNSYLVSKLGALIPAYRGVVGLIFKQCYLGNNPYLKQWNARGQRVYVRQNGIAQWYSAKAGILSASNAASFALAETFYTTGGIAPGAFHPATLVIGPFDKSVTIIAGLPDGSNQAVGDNVFVFNGVDYPYPPSYPHVTTIAGGTPIYTLPAGQTLTVRIKNLDSGSPCGASGYISVGGLAVDMNPAHIIRECLTDPEWGMGYTDDDIDDVSFTSAADTFYNEGLGVSLLWDKTKKIDDFVSLVQEHVDCALYVSRTTGKFVIKPIRGGYDEATLLHLDESNIVSVDDPTRVAFGELTNSVTVSYWDNSTGKDASVTVTDTALVQQQGVVINAPLQYPGFTNARNATIAAQRDLRALSSPLLSCTITADSDAKVLNIGDVFKFSWSRWGLVEVVMRVNGISYGTGRNNRVKISCTQDVFDTDTTVAVVVPEPGWTDPSAPPSASENELATEAPYYELVQALGQSDIDNKLLTHPEIGYVIAAASRPASAINASLYTDNDDGSGYGDVGAMDFAPSGTLTTDITKTQPNFVLSNGEDLEEIVIGTHVQIGEELMRVDAIDAVTGAVMVGRGVLDTVPQVHSAGDVALFWDAYAGFDPTEYVEGEEIKAKIIPVSGAGVLPLDAATEHTVEIAGRAARPYAPGDLRINGESYIENAFYEGEVSVSWTDRDRLQQTAGVLIDHTAGNIGPEAGTTYRLRVYVDDVLDQEIEPAVSPQLVTPLATGFVRIEVHAKRDDLYSWQAPSHEFINANLRLTESADHRYTEDGDVRSSED
Physico‐chemical
properties
protein length:851 AA
molecular weight: 91183,55440 Da
isoelectric point:4,60353
aromaticity:0,08461
hydropathy:-0,14360

Domains

Domains [InterPro]
DC_1879
ATT
2–163
DC_1879 DC_0016
IPR032876
ATT
316–470
IPR032876 DC_1311
YP_010738282.1
1 851
Architecture
ATT
STR
ATT
STR
RBD
ATT 2-163 | STR 260-315 | ATT 316-470 | STR 471-548 | RBD 549-820 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010738282.1
1 851
Domain Start End Length (AA) Confidence
N-terminal 1 150 150 0,7466
Central domain 151 349 200 0,3701
C-terminal 350 851 501 0,0418
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-150
Central
151-349
C-terminal
350-851

Taxonomy

  Name Taxonomy ID Lineage
Phage Sphingomonas phage Lucius
[NCBI] 		2686313 Uroviricota > Caudoviricetes > Johnpaulvirinae > Kharnvirus lucius >
Host Sphingomonas sp.
[NCBI] 		28214 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Sphingomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010738282.1 [NCBI]
Genbank nucleotide accession
NC_073025 [NCBI]
CDS location
range 15608 -> 18163
strand +
CDS
ATGGGCGGTAAATCAAAAAAGCAAACGGTTGGATACAAGTATTATCTTGGTATGCACCTTGCTTTGTGCCACGGTCCCATTGACGCCATTACGCGCCTTCGTGTTGACGACCGCGACGCATGGACAGGCAAAAATACCGGCGGAACCATCAATGTAAACGCCGCCGATTTGTTCGGCGGTGAAAAGCGCGAAGGCGGGGTTTCCGGTTCTATTGATGTTGCAATGGGCGGTCCCGCCCAAGGTCAAAATTCGTATCTTGTTTCGAAGCTTGGTGCGCTGATACCGGCTTATCGCGGCGTTGTCGGCCTTATCTTCAAACAATGCTATCTTGGCAACAATCCGTATTTGAAGCAATGGAACGCGCGCGGACAGCGTGTTTACGTTCGTCAAAACGGTATCGCGCAATGGTATTCGGCTAAAGCTGGCATCCTAAGCGCCAGTAACGCGGCCAGCTTCGCTTTAGCCGAAACGTTTTATACGACGGGCGGTATTGCGCCCGGCGCTTTTCATCCGGCGACCCTTGTAATTGGTCCTTTTGATAAGTCCGTAACTATAATCGCAGGCTTGCCCGATGGAAGCAACCAAGCGGTCGGCGATAACGTGTTCGTATTTAACGGCGTCGATTATCCTTATCCGCCATCGTATCCGCATGTTACGACGATAGCAGGCGGAACGCCAATATATACGTTGCCCGCTGGCCAAACGTTGACAGTTCGCATTAAAAACTTGGACAGCGGTTCGCCATGCGGCGCGTCGGGTTATATTAGCGTCGGCGGTTTGGCCGTTGACATGAACCCTGCCCACATTATCCGCGAATGCTTGACGGACCCCGAATGGGGAATGGGTTATACCGACGATGACATTGACGACGTGTCTTTTACGTCGGCGGCTGATACCTTTTACAACGAAGGTCTTGGCGTGTCCCTATTGTGGGATAAGACGAAGAAGATTGACGATTTCGTATCGCTTGTTCAAGAACACGTCGATTGCGCGCTTTATGTTTCACGCACGACCGGCAAGTTCGTTATCAAGCCTATTCGTGGCGGATATGATGAAGCAACGTTGCTTCATCTTGACGAAAGCAATATCGTAAGCGTTGACGACCCGACCCGCGTAGCTTTTGGCGAATTGACTAATAGCGTGACTGTTAGTTATTGGGATAATTCGACCGGAAAAGACGCAAGCGTTACGGTTACAGATACGGCGCTTGTTCAGCAACAGGGCGTCGTCATCAACGCCCCGCTTCAGTATCCCGGCTTCACGAATGCCCGTAACGCCACCATCGCGGCGCAACGCGATTTGCGGGCGCTATCTTCGCCGTTGCTTTCATGCACGATTACGGCGGACAGCGACGCAAAGGTCTTGAACATTGGCGACGTGTTCAAGTTCAGTTGGTCGCGTTGGGGCTTGGTTGAAGTCGTCATGCGCGTGAATGGCATTAGCTACGGCACGGGTCGCAACAATCGCGTGAAGATTTCATGCACCCAAGACGTTTTCGATACTGATACGACGGTTGCCGTTGTCGTTCCCGAACCGGGTTGGACGGACCCTAGCGCCCCGCCTTCAGCGTCCGAAAACGAACTTGCCACCGAAGCGCCTTATTACGAACTTGTTCAGGCGCTTGGCCAATCGGACATTGACAATAAGCTTTTGACGCATCCCGAAATTGGATACGTCATCGCCGCCGCTTCACGCCCTGCTAGTGCAATAAACGCAAGCCTTTACACCGACAACGACGATGGCAGCGGTTACGGTGATGTTGGCGCTATGGACTTTGCGCCTTCAGGAACACTTACGACGGACATTACGAAAACACAACCTAATTTCGTCTTGTCCAACGGCGAAGACCTTGAAGAAATTGTTATTGGAACGCATGTCCAAATTGGCGAAGAACTTATGCGCGTTGATGCTATAGACGCTGTTACCGGCGCTGTTATGGTCGGTCGCGGTGTTCTTGACACGGTGCCACAAGTTCATTCGGCTGGCGACGTTGCGCTTTTTTGGGACGCTTACGCCGGTTTCGACCCTACGGAATACGTCGAAGGCGAAGAAATTAAAGCCAAGATTATTCCAGTGTCGGGCGCTGGCGTTCTTCCTTTGGACGCCGCGACTGAACATACGGTCGAAATTGCGGGCCGTGCGGCGCGTCCTTATGCGCCGGGCGATTTGCGTATAAACGGTGAAAGCTACATCGAAAACGCTTTTTACGAAGGCGAAGTATCGGTTTCTTGGACCGACCGCGACCGCCTTCAGCAAACGGCGGGCGTTCTTATCGACCATACGGCGGGCAACATTGGCCCCGAAGCTGGCACGACATATAGGCTTAGGGTATATGTTGACGACGTGCTAGACCAAGAAATTGAACCGGCGGTTAGCCCGCAACTTGTTACGCCGCTGGCCACGGGCTTTGTTCGGATAGAAGTTCATGCCAAGCGTGACGACCTTTATTCATGGCAAGCCCCGTCGCATGAATTTATTAACGCAAACTTGCGTCTTACCGAAAGCGCCGACCATCGCTATACGGAAGACGGCGACGTTCGGTCTTCGGAGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7228342d2ffeedde8aae98309cc4a3f4b123497b588fbf8938811a687058b280
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3174
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50