Protein

View in Explore
Genbank accession
UWI83556.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,70
Protein sequence
MAGEQLLPWIDSGDAEGNRNSMQNFAGNGVTTSWDFNFAGGYISAADVKAYVYHSASGLTDAINPVVLTGPNTIQVIPAVPTGDFLVVYRDTPKDTPLVDYTTGAVLDEANLDKSNKQAVFVAAEMSDRFDAINASSADAITRAFEALSTANAAIADSAAAVATANATNATAAAAQAAAAAAVATANGASDVANGIAGTADAAFAAASTAAATANAAEATANGIAATANAASAAASTALTNANAAVATANDASAAAALSAQKFVTSAGAANQKPDTSYTYINPLSRACTITGGGDGSNVQMIGYGHNRQKFLGAATTGVWNYLPVNGIANLNFYRIAGDGTRTKLTYTSGTPTGNQWSGTVGASSVTWTLGTALGTLDKLFVEDPYAAIPATGVQPDYSWIGGGYDNVVDRGVMQHVTGAHNRVLDGDHTTMLGGSYHTNDGGSYNAFCGGTDNWNGSGATLGSGHFGGLRNYCGGSTSGTTFAQSCKVNSAYSWTHGYLNTINGTACSVGGRNNTASGSDSAVFGNGNTSTANYSFAIGNGNTVGHHYARSLGGYKGSTLYQGELLVWAYRDTAAPASPFVSRRQIPLSAATSTTAEANLVTLDGLVDITPPVGTAWKCTLEVWARSSALTSAAWELKFRVHTSASGILTLGAVSYVWSDVDPGLGTGDNVAAVFVVPAPNNALNFVVRPRTDSAVGMKWGAVLHVNEVN
Physico‐chemical
properties
protein length:711 AA
molecular weight: 72280,51120 Da
isoelectric point:5,09422
aromaticity:0,08439
hydropathy:-0,01828

Domains

Domains [InterPro]
DC_1152
ATT
1–200
DC_1152 DC_0261 IPR011049 DC_0296
IPR005604
ATT
23–132
IPR005604
UWI83556.1
1 711
Architecture
ATT
STR
STR
RBD
ATT 1-200 | STR 223-459 | STR 463-575 | RBD 576-711
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UWI83556.1
1 711
Domain Start End Length (AA) Confidence
N-terminal 1 280 280 0,9343
Central domain 281 547 268 0,8419
C-terminal 548 711 163 0,9704
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-280
Central
281-547
C-terminal
548-711

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage DLDT_So2
[NCBI] 		2972465 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UWI83556.1 [NCBI]
Genbank nucleotide accession
OP087423.1 [NCBI]
CDS location
range 31499 -> 33634
strand -
CDS
ATGGCCGGAGAACAACTATTGCCGTGGATCGACTCCGGTGACGCAGAGGGCAACCGGAACTCCATGCAGAACTTCGCCGGAAACGGCGTAACGACCTCGTGGGACTTCAACTTCGCTGGCGGCTACATCTCCGCGGCGGACGTGAAGGCATACGTTTATCACTCGGCCTCGGGGTTGACGGACGCTATTAATCCCGTCGTGCTCACCGGGCCGAATACCATTCAGGTGATCCCGGCAGTGCCGACGGGGGACTTCCTCGTCGTGTACCGGGACACGCCCAAGGACACGCCGCTTGTGGATTATACCACAGGTGCGGTGCTCGATGAGGCAAACCTCGACAAGTCGAACAAACAGGCGGTATTCGTGGCCGCCGAGATGTCCGACCGCTTCGACGCAATCAACGCCTCCAGCGCTGACGCAATCACGCGAGCCTTCGAGGCGCTGTCGACGGCCAACGCGGCCATCGCGGACTCTGCGGCTGCCGTGGCTACGGCCAACGCCACGAATGCAACTGCGGCCGCCGCACAGGCCGCTGCCGCGGCAGCCGTGGCTACGGCCAACGGCGCGAGTGATGTAGCTAATGGCATCGCCGGCACGGCTGACGCCGCCTTTGCTGCTGCCTCGACCGCGGCGGCTACGGCTAACGCCGCCGAGGCCACAGCCAACGGCATTGCGGCAACAGCTAACGCCGCATCGGCGGCGGCGAGCACCGCCCTCACCAACGCTAACGCGGCCGTCGCGACGGCTAACGACGCATCTGCGGCTGCTGCGTTGTCCGCCCAGAAGTTCGTAACATCCGCGGGCGCAGCGAACCAGAAGCCCGACACGTCCTACACCTACATCAACCCGCTGTCGCGCGCGTGCACCATCACCGGCGGCGGAGACGGCTCGAACGTCCAGATGATCGGGTACGGCCACAACCGCCAGAAGTTTCTGGGCGCGGCCACCACTGGCGTCTGGAACTACCTGCCGGTCAACGGCATCGCCAACCTGAATTTCTACAGGATCGCGGGAGATGGCACTCGCACAAAGCTGACGTACACATCCGGCACTCCGACCGGTAATCAGTGGTCCGGCACCGTGGGCGCCAGCAGCGTCACCTGGACGCTCGGCACGGCCCTTGGCACGTTGGACAAACTGTTCGTCGAAGACCCGTATGCAGCGATCCCCGCGACCGGCGTGCAGCCTGACTACTCGTGGATCGGCGGCGGCTACGACAATGTGGTCGACAGAGGCGTGATGCAGCACGTCACGGGCGCACACAACCGCGTGCTCGACGGCGACCACACCACGATGCTGGGCGGCAGCTACCACACCAACGACGGAGGCAGCTACAACGCATTCTGCGGCGGCACCGACAACTGGAACGGCTCTGGCGCCACGCTGGGCAGTGGGCACTTCGGCGGTCTGCGCAACTACTGCGGCGGCTCGACGTCTGGCACGACCTTCGCCCAGAGCTGCAAGGTGAACTCGGCGTACAGCTGGACGCACGGTTACCTGAACACCATCAACGGCACGGCTTGCTCGGTCGGCGGGCGCAACAACACCGCGTCCGGCTCGGACTCGGCCGTCTTCGGCAACGGCAACACCAGCACCGCCAACTACTCGTTCGCCATCGGCAACGGCAACACGGTCGGCCATCACTACGCCCGCAGTCTGGGCGGGTACAAGGGCAGCACGCTGTATCAGGGTGAGCTGCTGGTCTGGGCGTACCGCGACACAGCGGCCCCGGCGAGCCCGTTCGTAAGCCGTAGGCAGATTCCGCTGTCAGCGGCGACCTCAACTACCGCCGAGGCCAACCTCGTCACGCTCGACGGCCTTGTTGATATCACGCCGCCGGTTGGTACTGCATGGAAGTGCACCCTGGAGGTATGGGCGCGCAGTAGCGCGCTGACGTCGGCGGCATGGGAGCTGAAGTTCCGTGTGCATACGAGCGCCTCCGGCATCTTGACGCTCGGCGCCGTGTCCTATGTGTGGTCCGACGTCGATCCGGGCCTCGGCACCGGGGACAACGTGGCGGCTGTGTTTGTCGTTCCAGCCCCCAACAATGCGCTGAACTTCGTGGTCAGGCCGCGCACTGACTCGGCTGTTGGGATGAAGTGGGGTGCCGTGTTGCACGTCAATGAGGTGAACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
97853a4b90fba56ab0a4c8a035ac2b79bdd18ebb39d880abc2c54d97c3becd00
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7103
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological characterization and genomic analysis of novel phages DLDT_So2 and BHDT_So9 against Pseudomonas solanacearum, an infectious agent in tomato in Vietnam Pham,Q.-A.N., To,N.H., Vo,N., Tu,V.Q., Nguyen,T.M., Nguyen,H.D., Andrew,M., Le,T.-T.T., Vo,P.T., Huynh,O.N. and Hoang,H.A. — — GenBank