Protein

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Genbank accession
YP_009626140.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGKPTLTEVSMEKVKLLELDLLGTNPDNYIDETQPVTVRTRDWYRPDYAPFFEDDFELYDGNGMLLRKNKDYVFESLSDVLLTKTGKPVHLFFRILNTTLNNKKSFRIKYRSVGNTGFPRSLIQKMTNELIHSEYWVDWETQVLGKPETYPAYQHWHDIATEVANWDQFINFAQTTLEMVVRGRKDHWVENETKIDRAERDFTNRHRAFWAALDDHDQNYQNPHKLVRGDFELQHIPNYPLSTLSEDLAGIRPTSFTTPKGLKETVSQKRRISPGHVAAGRVDYTVPPNTIGVTRQQNIDELSLGGIRKYLNGDMAYVVAGSDEQPPTSIWLTDTDAELQQISYDLAPVYPPIAGKDLVMDRTLRVLGKGYAVSHHSDNLSALFYLDPDSVHLAGQKNCVRLDLSNVNTRLGGDWVNNSWLFTISNTVFLLGTKPDSLGVEYELYSAKITALSPATTLVLKPHEVSVEDKDGIVGNPSSTLPLIDVIKTGADTYRQFHHLFASDVKPVFNQHMTLVTGDDDLRGEHHFFLKIIKTILVNGEALPIEMSWSFDVNQNVLYRNLSGSNAKTYKSLSDVSSFDPAIVELVKHMGVDYGDTHFSLTGVIHVLTKGSKVRRLVTHYDTLEQLYLNRIGVNLKRSPTDQRLVGIPTAVSDWHFGILADSKMVYLGKRVLVKRNIWDLRDHITPGTGGVHYIHVGFVGGKTRTWLSSDAQAKGRSVVIAKVNYTSAGISSIVQSGDI
Physico‐chemical
properties
protein length:740 AA
molecular weight: 83505,46790 Da
isoelectric point:6,38708
aromaticity:0,09459
hydropathy:-0,35027

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009626140.1
1 740
Domain Start End Length (AA) Confidence
N-terminal 1 363 363 0,9934
Central domain 364 562 200 0,1509
C-terminal 563 740 177 0,5305
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-363
Central
364-562
C-terminal
563-740

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP4B
[NCBI] 		1262540 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus VP4B
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009626140.1 [NCBI]
Genbank nucleotide accession
NC_042136 [NCBI]
CDS location
range 191202 -> 193424
strand +
CDS
GTGGGGAAACCCACCCTAACAGAGGTTTCTATGGAAAAGGTAAAATTGTTGGAACTGGATTTGTTAGGCACAAACCCAGACAACTATATAGACGAGACCCAACCGGTCACCGTCCGGACGCGTGATTGGTACCGACCTGACTACGCACCTTTCTTTGAAGATGATTTTGAACTTTACGACGGTAACGGTATGTTGCTTCGTAAGAACAAAGACTATGTGTTTGAATCATTGAGTGACGTTTTACTTACCAAAACAGGTAAACCGGTTCACTTGTTTTTCCGTATACTTAACACGACGTTAAATAATAAAAAGTCGTTTCGTATCAAATACCGTAGTGTCGGTAATACCGGGTTCCCCCGTTCACTGATTCAGAAAATGACGAATGAACTCATCCACAGTGAATACTGGGTGGATTGGGAGACACAAGTTCTAGGTAAGCCAGAGACTTACCCAGCTTATCAACACTGGCACGACATTGCTACCGAAGTCGCTAACTGGGATCAATTCATCAATTTTGCTCAGACCACTTTGGAAATGGTGGTGCGTGGTCGTAAAGACCATTGGGTGGAAAACGAAACTAAGATCGATCGTGCGGAGCGTGATTTCACTAATCGACATCGTGCTTTCTGGGCTGCGTTAGATGATCATGATCAAAACTACCAAAACCCGCATAAGTTAGTACGCGGAGATTTTGAGTTACAACACATCCCTAATTACCCGTTAAGTACGTTGTCAGAAGACTTAGCTGGGATTCGTCCAACGAGTTTCACCACCCCTAAAGGGTTAAAAGAAACCGTGAGTCAAAAACGTCGTATTAGTCCGGGGCATGTAGCGGCAGGTCGTGTGGATTACACGGTACCACCAAACACCATTGGGGTAACACGCCAGCAAAATATCGATGAGTTGTCCCTAGGTGGCATTCGTAAGTATTTGAATGGCGATATGGCTTATGTGGTGGCTGGGAGTGATGAACAACCCCCTACTAGCATTTGGTTGACTGACACTGACGCTGAACTCCAACAGATCAGTTATGACTTGGCACCGGTCTATCCACCAATTGCAGGTAAAGATCTGGTCATGGACCGTACGTTGAGAGTCTTAGGTAAAGGTTATGCGGTTTCTCATCATTCGGATAATTTGAGTGCATTGTTCTATTTAGACCCTGACTCCGTCCATCTGGCTGGTCAGAAAAATTGTGTGAGACTCGACCTTAGTAACGTTAATACTCGTTTGGGTGGAGACTGGGTAAATAACAGTTGGTTGTTCACTATTTCGAATACCGTTTTCCTGTTAGGCACTAAACCCGACTCACTCGGTGTAGAGTACGAACTATACTCAGCTAAGATTACCGCTTTATCCCCAGCGACGACCTTGGTTCTTAAACCCCATGAAGTTTCAGTGGAAGATAAAGATGGGATAGTGGGTAATCCATCTAGCACACTGCCTTTGATTGATGTCATCAAGACCGGTGCTGATACTTACCGCCAGTTCCACCACTTATTCGCAAGTGATGTGAAACCGGTCTTTAACCAACACATGACGTTGGTGACTGGTGATGACGATCTGCGTGGGGAGCACCATTTCTTCTTAAAGATCATTAAAACGATCTTAGTGAATGGTGAAGCTTTACCGATAGAAATGTCTTGGTCTTTTGATGTAAACCAGAACGTACTGTATCGCAACCTAAGCGGTTCTAACGCTAAGACGTACAAATCATTAAGTGATGTGTCTAGCTTTGATCCTGCGATCGTAGAGCTCGTTAAACACATGGGTGTGGACTACGGTGACACGCACTTTAGTTTAACGGGAGTTATCCACGTATTAACCAAAGGTTCTAAAGTAAGACGTTTAGTCACCCATTACGATACTTTAGAGCAACTCTACTTAAATCGCATCGGGGTTAATCTAAAACGTTCACCAACGGATCAACGTTTGGTGGGGATTCCTACCGCCGTATCAGATTGGCACTTTGGGATTCTAGCGGATTCTAAGATGGTTTATTTGGGTAAGCGTGTGTTGGTTAAACGTAATATCTGGGATCTTCGCGATCATATTACGCCGGGGACTGGCGGGGTGCATTACATCCACGTAGGGTTCGTAGGAGGGAAGACACGAACTTGGCTTAGTTCGGACGCACAAGCAAAGGGACGATCTGTTGTTATTGCTAAGGTGAACTATACGAGTGCGGGGATTAGTTCTATTGTACAGAGCGGAGACATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52ceba2dd767c0b628d9a2a96dace36772e0903e9960eaf343550b7df64ece3e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5042
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel phiKZ-like Vibrio phage Luo,Z. and Yu,Y. 2015-12 — GenBank