Protein

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Genbank accession
YP_009609789.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,91
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MAVRRPLVLANGDVTELPSSDYLFGTREKLSAARTYYVRTDGNDSNTGLANTSAAAFLTMQKAVDTAAGLDLGTYDVTIRATGTFNETIFLRRLNTAGGRVNVRGDATNMTGFVLSPSTGSCVNTGNGFTGQYDFSYMKFAGLGGGIRGTAGGGGTITFSNVDWGQMNSEHIAAPQGCLVMATGPYQISGGAYAHAAAYDSAQLRIQNVTVTIINAPTFVAGFALGTRGGVILITGTTFTGSALGKKFDANQGGGILTFSGVNYLPGDTPGSVVSPGWYDQLSSDGILDRNRIINGKCEVANAVTSFANQTIGTGGVPVEMFVFIGSGSSAAQVTVSQQVDAPYGFRNSIRLLVTTAQPSTGTTDTSGIQTRIEGYNVSDLVGQTFTLSFWVKSPRVGTHSVGLYNSGFDRSYVAPYTVNAANTWEQKQIVVEGGLPSSGTWDFANGMGLAVRWNTTCGTQYQTSSSNTWVSGLYLGAPGQVNCLDTVNNIFALTGMQLRKGAGTLPYDHTPYVQELIQCRRYYQEYWGTSNGAFSFAGRGSPGGGNGIFFGMSLPVEMRVPPTATIVGTFVTGNCSQPVINAVSKNFISMVGNAATAGDAYYASQSSSVGFTLNARLQ
Physico‐chemical
properties
protein length:619 AA
molecular weight: 64967,78420 Da
isoelectric point:7,53477
aromaticity:0,10178
hydropathy:-0,03813

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009609789.1
1 619
Domain Start End Length (AA) Confidence
N-terminal 1 73 73 0,8933
Central domain 74 287 215 0,9911
C-terminal 288 619 331 0,9446
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-73
Central
74-287
C-terminal
288-619

Taxonomy

  Name Taxonomy ID Lineage
Phage Acidovorax phage ACP17
[NCBI] 		2010329 Uroviricota > Caudoviricetes > Busanvirus >
Host Acidovorax citrulli
[NCBI] 		80869 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009609789.1 [NCBI]
Genbank nucleotide accession
NC_041997.1 [NCBI]
CDS location
range 121754 -> 123613
strand +
CDS
ATGGCAGTTCGACGTCCCCTGGTCCTTGCGAACGGAGACGTCACGGAGCTTCCCTCCAGTGACTATCTGTTCGGGACACGAGAGAAACTCTCGGCTGCCCGCACGTACTACGTGCGAACGGATGGCAACGACTCCAACACCGGATTGGCGAACACATCTGCTGCAGCATTCTTGACGATGCAGAAAGCAGTGGACACGGCGGCGGGCCTGGATCTGGGGACATACGATGTCACCATCCGGGCTACTGGCACCTTCAACGAAACGATTTTCCTGCGCCGTTTGAATACCGCCGGCGGCCGTGTGAACGTGCGCGGCGATGCGACCAACATGACGGGGTTCGTCCTGAGCCCTTCGACGGGTTCCTGCGTCAACACCGGCAATGGCTTCACAGGGCAGTACGACTTCAGCTACATGAAGTTCGCGGGCCTAGGCGGCGGCATCCGTGGCACCGCAGGCGGCGGCGGTACCATCACCTTCAGCAACGTGGACTGGGGGCAGATGAACTCGGAGCACATCGCGGCTCCGCAAGGCTGTCTCGTCATGGCAACTGGCCCCTACCAGATTAGCGGGGGCGCATACGCGCACGCCGCTGCCTATGACAGTGCACAGCTACGCATCCAGAACGTTACGGTGACGATCATCAACGCGCCGACGTTCGTTGCAGGTTTCGCCCTCGGCACTCGCGGTGGCGTGATCCTCATCACAGGTACCACCTTTACAGGTAGCGCCCTGGGCAAGAAATTTGACGCCAACCAGGGCGGGGGCATCCTGACCTTTTCGGGCGTGAACTACCTCCCCGGCGATACCCCGGGTTCGGTTGTCAGCCCAGGTTGGTACGATCAACTCTCTTCAGACGGCATCCTGGATCGCAACCGCATCATCAACGGAAAGTGCGAAGTCGCGAACGCCGTGACCAGTTTCGCTAACCAGACCATTGGTACCGGAGGCGTTCCTGTAGAGATGTTCGTCTTCATTGGCTCAGGCTCAAGCGCCGCTCAAGTCACTGTCTCCCAGCAGGTGGATGCCCCTTACGGCTTCCGTAACAGCATTCGCCTCCTTGTGACAACAGCGCAGCCATCAACGGGCACCACCGACACTTCGGGCATCCAGACTCGCATTGAAGGCTACAACGTCAGCGACTTGGTCGGACAGACATTCACGTTGAGCTTCTGGGTGAAGAGCCCTCGAGTAGGCACTCACTCCGTGGGTCTATACAACAGTGGGTTCGACCGATCCTACGTTGCCCCATACACTGTGAACGCAGCTAACACCTGGGAGCAGAAACAGATTGTGGTGGAAGGCGGCCTACCGAGTAGCGGCACATGGGACTTCGCTAACGGGATGGGTCTGGCGGTACGCTGGAACACGACTTGCGGAACCCAATACCAGACATCTAGCTCGAATACCTGGGTGAGTGGTTTGTACTTGGGCGCGCCCGGTCAGGTGAACTGCTTGGACACCGTGAACAACATCTTCGCCCTGACCGGCATGCAATTGCGGAAGGGCGCAGGTACGCTTCCCTACGACCACACGCCGTACGTTCAGGAGCTCATCCAATGCCGGCGATACTACCAGGAGTATTGGGGGACTTCCAACGGGGCATTTAGCTTCGCCGGTCGCGGTAGTCCCGGGGGCGGCAACGGCATCTTCTTCGGCATGAGCCTGCCGGTAGAAATGAGGGTGCCTCCGACGGCAACGATTGTCGGTACCTTCGTCACTGGCAACTGTTCGCAGCCCGTCATCAACGCCGTCTCCAAGAACTTCATCAGCATGGTGGGGAATGCAGCCACGGCCGGTGATGCATACTACGCTAGCCAGTCGAGTAGCGTCGGATTCACTTTGAACGCAAGGCTCCAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b4eca6312ba5659c7773180fafe052a11c116438f39509eb1d4359fddc7d1d12
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8727
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence of novel bacteriophage infecting the causal agent of bacterial fruit blotch, Acidovorax citrulli Midani,A.R., Park,S.-H. and Choi,T.-J. 2020-06-03 — GenBank