Protein

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Genbank accession
QHB38560.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,73
TF
Evidence RBPdetect2
Probability 0,52
Protein sequence
MDIIKLFSGGFPMTIETLAFIQDAYTKPLSALSNMAGDKSILDGVVLSGSDISEGYFTHNKEVLYFKASTLGAVVKIVEKTVQVPYNEDTNLDGNLDLKDAYVTRYGTTNDPLDVDEVLVDQFNYSDLVRITNFRNLTPVGAVVLWFDAGNTPAGWAVCDGTNGTPDLSDKFIKGAGIESAVNTSSGSRTKTLTSVNLPAHTHTIPAHTHEYRDGYYIEAYSSGGIDGNEFVGGGKRGSSGTDSDNSYIFYKNRITNSGGSGNTSSVGNATAFNVEPLHYAAIYIQFKGL
Physico‐chemical
properties
protein length:290 AA
molecular weight: 31153,12190 Da
isoelectric point:4,83111
aromaticity:0,10345
hydropathy:-0,21862

Domains

Domains [InterPro]
cd22641
STR
8–221
cd22641
cd22641
STR
8–210
cd22641
SSF88874
STR
137–285
SSF88874
QHB38560.1
1 290
Architecture
STR
STR 8-285 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QHB38560.1
1 290
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,9924
Central domain 133 279 148 0,0026
C-terminal 280 290 10 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-279
C-terminal
280-290

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage vB_FspM_lotta8-2
[NCBI] 		2686243 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium sp. LMO8
[NCBI] 		2654244 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Flavobacterium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QHB38560.1 [NCBI]
Genbank nucleotide accession
MN812204 [NCBI]
CDS location
range 32201 -> 33073
strand +
CDS
ATGGATATAATTAAACTATTTTCGGGCGGGTTTCCTATGACAATAGAAACCCTTGCATTTATTCAAGACGCATACACAAAACCTTTAAGCGCGCTTTCAAATATGGCTGGCGACAAGTCAATTCTTGACGGGGTTGTGTTGTCAGGTTCAGACATTTCTGAAGGTTATTTTACACACAACAAAGAAGTTCTTTATTTCAAAGCTTCGACGCTTGGCGCTGTTGTTAAAATAGTTGAAAAAACTGTTCAAGTTCCATACAATGAAGACACAAATCTTGACGGAAATCTTGACCTTAAAGACGCTTACGTTACAAGATACGGAACGACAAACGACCCGCTTGACGTTGACGAAGTGCTTGTTGATCAATTCAATTATTCAGATCTTGTCCGAATTACCAACTTTAGAAACTTAACGCCTGTCGGTGCTGTTGTTCTTTGGTTCGACGCTGGGAATACGCCAGCGGGCTGGGCTGTTTGTGACGGCACGAACGGAACGCCTGACCTTAGTGACAAATTCATAAAAGGGGCTGGAATTGAATCCGCTGTAAACACTTCTTCAGGTTCAAGAACAAAAACGCTTACTTCTGTAAATTTGCCAGCACATACGCACACAATACCAGCACACACGCACGAATACCGTGACGGCTATTATATCGAAGCATACAGTTCGGGCGGAATAGACGGGAATGAATTCGTTGGCGGTGGAAAAAGAGGTTCTTCGGGAACTGACAGCGACAACAGTTATATTTTTTATAAAAACAGAATAACCAACAGCGGCGGCAGCGGAAATACTTCTTCAGTAGGAAATGCAACAGCATTCAACGTTGAACCTTTACATTATGCGGCTATTTATATACAATTTAAAGGTTTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
53775b2bff02d53027c3cff56af3842c597ba69000baa8704a8d8e1b849847d1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8053
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diversity and Host Interactions Among Virulent and Temperate Baltic Sea Flavobacterium Phages Nilsson,E., Bayfield,O.W., Lundin,D., Antson,A.A. and Holmfeldt,K. 2020 — GenBank