Protein

View in Explore
Genbank accession
WYW01642.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MTRLTLATVNAEIAKSGGKETLVKGKGYFYWIGGRADADPQIWTSIYVAALNQMTLAQWLEDWKRNDDQYNKPTPDKETRKMAIRHVQTLAAPTKSGKTASANPALEAAEAELKKVQSTIQGFKARGLVPTSPWERKLKDAKAAVSAAKKKKTTAAPAQETASPATDFAKSLKKGVRVLVNLGNTKEPSYFLGAITKNNASKGSVNVLFDDGDVAEVRAIKSKVGIVGIAIDKVRKSEVPADQIDKWLAGAAPTTKTPASPKAAGEWTVKSIVAWLESAGYTKPEPTRLPTRFERKLPSGAVIQADVNMKKTVALTAMGKEGYVHYTVDSFAKLKNADSSLAKSAVVGTKVGNALIPPKKSGSPKPFSPAEARKVIGAIPGWKASNVKNKASATFTKDYPNGVTATALIFPTHVTFNYPQGENDHVGDLSKIPAYIQQIDEDQAAPVEDGKALDDLAKALKGWPNKVLPRDADEDNFLLRGFEDDDLPADVEPTADAIEAHAISIFKKMKSVDNFKKSKMYHGDNTYSFSAGGTVGYVYFDEDGVGMVRATPFQESTPGKS
Physico‐chemical
properties
protein length:561 AA
molecular weight: 60403,93150 Da
isoelectric point:9,37559
aromaticity:0,07665
hydropathy:-0,44153

Domains

Domains [InterPro]
DC_2252
STR
1–561
DC_2252
Coil
Unmapped
106–126
Coil
WYW01642.1
1 561
Architecture
STR
STR 1-561
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuM-KoPa-5
[NCBI] 		3132644 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW01642.1 [NCBI]
Genbank nucleotide accession
PP496440.1 [NCBI]
CDS location
range 10284 -> 11969
strand +
CDS
ATGACCAGATTGACCCTAGCAACCGTCAACGCCGAGATAGCAAAGTCCGGTGGCAAAGAAACTCTGGTCAAGGGTAAGGGCTACTTCTACTGGATAGGTGGCCGTGCCGACGCCGATCCTCAAATCTGGACTTCCATTTACGTTGCTGCGCTAAACCAGATGACGCTGGCCCAGTGGCTGGAAGACTGGAAGCGCAATGACGACCAATACAACAAACCTACTCCCGACAAGGAAACCCGCAAAATGGCTATCAGACACGTTCAGACCCTCGCAGCTCCTACCAAATCCGGTAAGACGGCATCTGCCAACCCAGCACTGGAAGCAGCCGAAGCTGAACTTAAAAAGGTTCAGAGCACCATTCAGGGTTTCAAAGCCCGTGGCCTGGTCCCTACTTCCCCGTGGGAAAGGAAACTCAAGGACGCTAAGGCAGCTGTGTCCGCTGCCAAGAAAAAGAAGACCACTGCTGCTCCTGCACAGGAGACTGCTTCCCCGGCTACCGACTTCGCCAAGTCGTTGAAGAAGGGCGTTCGTGTACTGGTCAATCTCGGCAACACCAAAGAGCCGTCCTACTTCCTCGGCGCCATTACCAAGAACAACGCCAGCAAGGGTTCGGTCAACGTGCTGTTCGATGACGGCGACGTTGCAGAGGTCCGTGCGATCAAATCCAAGGTCGGTATCGTGGGCATCGCCATCGATAAGGTACGCAAGTCGGAAGTTCCTGCTGACCAGATCGACAAGTGGCTGGCCGGTGCAGCTCCAACGACTAAGACCCCTGCCAGCCCGAAAGCGGCGGGAGAGTGGACTGTCAAGTCTATTGTGGCGTGGCTGGAAAGCGCAGGCTACACCAAACCAGAACCAACCCGGCTTCCTACCCGGTTCGAAAGGAAGCTTCCGTCTGGTGCTGTGATTCAAGCAGATGTAAATATGAAAAAGACCGTGGCCCTAACCGCCATGGGTAAAGAAGGGTATGTACATTACACAGTTGACTCCTTCGCCAAGCTCAAGAACGCAGACTCTTCGCTTGCCAAGTCGGCTGTTGTCGGCACCAAGGTAGGGAACGCATTGATCCCGCCGAAAAAGTCGGGTTCACCTAAACCGTTCAGCCCAGCGGAAGCCCGGAAGGTCATCGGTGCTATCCCCGGCTGGAAGGCATCCAACGTGAAGAACAAAGCGTCAGCCACGTTCACCAAAGATTACCCGAACGGTGTAACTGCTACCGCATTGATCTTCCCGACTCACGTTACGTTCAATTATCCTCAAGGTGAGAACGATCACGTCGGCGACTTGTCCAAGATCCCAGCCTATATCCAACAGATCGACGAGGATCAAGCCGCACCAGTAGAAGACGGCAAAGCACTGGATGATCTGGCCAAGGCATTGAAGGGCTGGCCGAACAAGGTCCTCCCACGGGATGCTGACGAAGACAACTTCCTGCTGCGCGGGTTTGAAGATGATGACCTTCCGGCTGATGTGGAGCCAACCGCTGACGCCATCGAAGCACATGCAATCTCGATCTTCAAGAAGATGAAAAGTGTTGACAACTTCAAGAAGAGCAAGATGTACCACGGGGATAACACTTACTCCTTCTCGGCTGGCGGCACCGTGGGCTACGTGTACTTCGACGAAGATGGCGTTGGCATGGTCCGTGCAACCCCGTTCCAAGAGTCCACGCCGGGAAAGTCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ceed0d9e6679ec61c0ae00ccaa1c9cbcd8328866c4962eb5244cec4dad296694
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,5535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank