Protein

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Genbank accession
QBJ04633.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MADIGQLPIENIWSTGGDMVAPTPAQQQGGWGIQSVPRQWWNWKWNLHDTNLAYLLQKGIPEWTSTQEYIANKSFCTRGGFVYKAVRTHTGSDPAQVSANWARAFADYTTASSALGSLTPREGGIPFFLSATGAGVFDSTAYGRDMLNVANAAGARNYIAAQESSIILSNLAAVTRAANSVPYFNTDTSMATFNITAYGRGLVNAANAENARSFLGLANSAIITADPANRAHTLVYRDAAGNFNAGVITATLSGNATTANKLRTPVTINGVPFDGSSNIVLPGLDTSYAGTVARLHVNGANMTGTDKTTQIALRNKSDNDWISLAVVDDNILQFVFRSATNPIVQIGSEVVLHTGNQFSLGPTLSDARSRLGLDRLSQGSPDTVVFSGVLNNGAYLTVQPSSIGGFDGAANNWMFRFDANGNMTHGTVPVARITGLANSATIPAVTTAQANSLVQRDGNGSFSAIGINAYGAIIGYGSNIYSRASASGGNAHIGFQRADGTELGLIWGIPSSGAMSFRTSGGTTGMTLTGQDLLVAGRVNAATINASGNVNATGNVNAGSATLNTAGNITGPAYGAYGSITNWVDSVYAKKGEIPNDIARAGAAWDAVGQYILAGDQSGGSGGPGTTRAGSQLKPYSTISFTAGALPAAGTYRCMGAFAGGGNQITLWQRIS
Physico‐chemical
properties
protein length:672 AA
molecular weight: 69601,44900 Da
isoelectric point:8,36911
aromaticity:0,08482
hydropathy:-0,06503

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBJ04633.1
1 672
Domain Start End Length (AA) Confidence
N-terminal 1 312 312 0,6389
Central domain 313 511 200 0,2857
C-terminal 512 672 160 0,7895
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-312
Central
313-511
C-terminal
512-672

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage JHP
[NCBI] 		2544985 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ04633.1 [NCBI]
Genbank nucleotide accession
MK443265.1 [NCBI]
CDS location
range 1077 -> 3095
strand +
CDS
ATGGCTGATATCGGTCAACTACCTATTGAAAATATTTGGTCCACAGGCGGGGATATGGTAGCCCCGACCCCAGCCCAGCAACAAGGCGGATGGGGAATTCAATCGGTTCCTCGTCAATGGTGGAACTGGAAATGGAACCTGCACGATACCAACCTAGCTTATCTGCTACAAAAGGGTATCCCGGAGTGGACTAGTACTCAAGAGTACATTGCAAACAAATCGTTCTGCACCCGAGGAGGGTTTGTTTACAAAGCTGTACGTACACACACAGGAAGCGATCCAGCTCAAGTTAGTGCAAACTGGGCGAGAGCTTTCGCAGATTATACGACAGCTAGCTCTGCTCTTGGAAGCTTGACCCCAAGAGAGGGTGGAATCCCATTCTTCCTGAGCGCTACAGGTGCTGGAGTATTTGACTCTACAGCTTATGGCCGTGACATGCTGAACGTAGCCAACGCGGCAGGAGCTAGGAACTACATCGCGGCCCAAGAAAGTTCTATCATTCTGTCTAACCTAGCTGCTGTAACGCGAGCTGCTAACTCTGTACCGTACTTCAATACGGACACGTCCATGGCAACATTCAACATCACAGCATATGGCCGGGGTCTTGTGAATGCTGCTAACGCGGAAAACGCAAGAAGCTTCCTAGGTCTAGCTAACTCTGCTATCATCACGGCCGATCCGGCGAACAGGGCTCATACCCTCGTCTACCGCGATGCTGCTGGAAACTTCAACGCAGGTGTGATTACGGCTACGCTTTCTGGTAACGCGACTACAGCTAATAAGCTTAGAACTCCCGTAACTATTAACGGTGTTCCATTCGACGGAAGTTCGAATATTGTTCTCCCCGGTCTTGACACAAGCTATGCTGGAACAGTAGCTAGGCTCCACGTTAATGGTGCCAACATGACTGGAACGGACAAAACGACTCAAATTGCTCTGAGAAACAAATCGGACAACGATTGGATCAGTCTTGCAGTAGTCGATGACAACATCCTTCAGTTTGTTTTCAGAAGTGCAACAAACCCAATCGTGCAGATCGGTAGTGAAGTTGTCCTGCACACTGGTAACCAATTCTCCCTTGGACCTACTCTGAGCGATGCACGCAGCCGACTAGGCCTTGATAGGCTGTCTCAAGGGTCTCCTGATACAGTTGTGTTCTCCGGTGTTCTGAATAACGGAGCATACCTCACTGTTCAGCCGTCTAGCATCGGAGGTTTCGACGGTGCTGCCAATAACTGGATGTTCCGTTTTGATGCGAATGGTAACATGACTCATGGAACTGTTCCAGTTGCAAGAATCACTGGTCTTGCCAACTCTGCTACAATTCCTGCCGTAACCACTGCTCAGGCTAACTCTCTTGTCCAGAGAGACGGAAATGGAAGTTTCAGCGCTATTGGAATTAACGCCTACGGAGCCATCATTGGGTACGGCTCTAACATCTACAGCCGTGCTTCCGCATCTGGAGGCAACGCTCATATCGGATTCCAAAGGGCAGATGGTACTGAGCTAGGACTCATCTGGGGTATTCCTTCCAGCGGAGCTATGAGCTTCCGCACATCGGGTGGAACAACTGGTATGACCCTGACAGGGCAAGATTTGCTTGTCGCCGGAAGAGTTAATGCTGCAACCATAAACGCCTCTGGTAACGTTAACGCTACAGGGAACGTTAACGCTGGTTCTGCTACTCTGAACACAGCAGGTAACATCACAGGTCCTGCTTACGGAGCTTATGGTTCGATTACCAACTGGGTGGATTCTGTTTACGCGAAGAAGGGAGAGATTCCTAACGATATCGCTAGAGCTGGGGCAGCTTGGGACGCAGTTGGGCAGTATATCCTAGCTGGGGATCAATCTGGAGGGTCTGGTGGACCGGGGACAACTAGAGCTGGAAGCCAGTTGAAGCCTTATTCGACCATCAGCTTCACAGCAGGGGCACTACCGGCAGCGGGCACCTATAGATGTATGGGAGCGTTTGCAGGCGGTGGTAACCAGATTACCCTGTGGCAGAGAATTTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
48c16c6f33a3f7f75cc425bd92ba0b6d96e524518fb14e35c2b5093093590f39
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome characterization and animal model rescue studies of bacteriophage JHP Alvi,I.A., Asif,M., Tabassum,R., Abbas,Z. and Rehman,S.U. 2017-04-18 — GenBank