Protein

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Genbank accession
YP_007517918.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGQPVIRSGLDSHAGHASPTPNPFHKTAYTGGSPNVNTNGAATIRKGKDATSCGDPATGGSTTVFVNGKGIHRSGDATGGHGSWVPNNATGGSSNVNAG
Physico‐chemical
properties
protein length:99 AA
molecular weight: 9683,32230 Da
isoelectric point:9,51329
aromaticity:0,04040
hydropathy:-0,60909

Domains

Domains [InterPro]
G3DSA:2.60.200.60
STR
1–67
G3DSA:2.60.200.60
YP_007517918.1
1 99
Architecture
STR
STR 1-67 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007517918.1
1 99
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0031
Central domain 11 88 79 0,0039
C-terminal 89 99 10 0,9776
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-88
C-terminal
89-99

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC008M
[NCBI] 		1283076 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidatus Pelagibacter ubique HTCC1062
[NCBI] 		335992 Bacteria > Proteobacteria > Alphaproteobacteria > Pelagibacterales > Pelagibacteraceae > Candidatus Pelagibacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007517918.1 [NCBI]
Genbank nucleotide accession
NC_020484 [NCBI]
CDS location
range 30815 -> 31114
strand +
CDS
ATGGGTCAACCAGTTATACGTTCAGGTTTAGATAGTCATGCTGGGCATGCCAGTCCTACTCCTAACCCTTTTCACAAAACAGCATACACAGGTGGGTCACCTAATGTTAATACTAATGGCGCTGCCACTATTCGTAAAGGTAAAGACGCCACTTCTTGTGGAGACCCTGCTACAGGTGGGTCAACTACTGTATTTGTAAACGGTAAAGGTATTCACAGGAGTGGTGACGCAACAGGTGGTCATGGTAGTTGGGTACCAAATAACGCAACAGGTGGAAGTTCTAACGTAAACGCTGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
bb123da77d9fcd17186a71bc280330a5a74d624990482c7f5c415f87c666c656
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9029
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50