Protein

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Genbank accession
YP_009209917.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MTTTNTLKHISDKSEYKTFDPTGTSFPPSVTNVQEALGALAPIAIDGFIPESTVAVPGIIRLATEQEVIDGIGNNTAVTPETLKARLNIPTQATETVVGITRYATNAEAIDGTVTDAAIVPSSLKASIDNTFNTRTSTEDRNGVIKISTQAAALAGTDDTTAMTPLKVSLAIGAATAALPTYSTATTTIQGIVKIATPAEVQAGAMNNGVAVSPLGLISLTANASRRGLVQLASSAEAITGTDATKAITPQALQAKTGNTGRLGIVKLTTTVGSGDGNTALAYNANVISTTGGTINGTLNVNGTLRRNGQDVVTRNELKDSVPIGTIIMWGGQTGNIPSGWEICDGGNVGDAGFRNVVGSKWGATGNKPDFRGLFPRGSNSSNDGAMKEWETNINIRNAKGNDSKQKPKLGQGVGSYGHGTVQAQQLRFHKHAGGFGEHDNSGAFGNTVRSNYAGTRKGLDWDNRSYFTNEGYEIDGAGSRDSRTTLNSEGLIGNESRPWSMSILFIIKVR
Physico‐chemical
properties
protein length:511 AA
molecular weight: 53202,59940 Da
isoelectric point:7,77639
aromaticity:0,05088
hydropathy:-0,27710

Domains

Domains [InterPro]
DC_0176
STR
1–434
DC_0176
SSF69349
STR
249–334
SSF69349 IPR044916
G3DSA:2.10.280.10
Unmapped
249–286
G3DSA:2.10.280.10 IPR037053 IPR027448
IPR015173
STR
253–310
IPR015173 SSF88874
YP_009209917.1
1 511
Architecture
STR
ATT
STR
STR 1-310 | ATT 311-372 | STR 373-510 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_VR25
[NCBI] 		1567028 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Gaprivervirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009209917.1 [NCBI]
Genbank nucleotide accession
NC_028925 [NCBI]
CDS location
range 88376 -> 89911
strand +
CDS
ATGACAACGACTAACACGCTAAAACATATTAGCGATAAATCCGAATATAAAACATTTGACCCGACGGGAACTTCATTTCCTCCGTCAGTAACAAATGTTCAGGAAGCATTGGGGGCTTTGGCTCCTATTGCTATTGATGGATTTATCCCAGAATCTACGGTTGCGGTACCAGGTATTATTCGCCTGGCGACTGAACAAGAAGTTATTGATGGCATAGGCAATAACACAGCAGTAACCCCCGAAACTCTTAAAGCTCGTTTGAATATTCCAACCCAGGCCACAGAGACTGTTGTCGGAATTACCCGTTACGCAACCAATGCAGAAGCTATTGATGGCACAGTAACCGATGCAGCTATTGTCCCATCAAGCCTTAAAGCTTCTATTGATAATACATTTAATACCCGCACTTCTACAGAAGACCGTAATGGTGTAATTAAGATTTCGACCCAAGCCGCTGCTCTGGCAGGAACGGATGATACAACGGCCATGACTCCTTTGAAGGTTTCATTGGCCATCGGTGCAGCAACTGCAGCTCTTCCAACTTATAGCACAGCAACAACCACTATACAAGGGATTGTTAAAATTGCAACCCCAGCCGAGGTTCAAGCTGGTGCAATGAATAACGGTGTGGCAGTTTCTCCACTTGGGCTTATTTCATTGACTGCAAATGCCTCCCGCAGAGGGTTGGTCCAATTGGCTTCCAGTGCTGAAGCAATTACAGGTACGGATGCAACAAAAGCAATTACTCCACAAGCTCTTCAGGCAAAAACTGGTAATACCGGGCGACTTGGCATTGTCAAACTGACAACTACCGTTGGTTCAGGGGATGGTAACACTGCTCTTGCATATAATGCAAACGTAATTTCAACCACTGGCGGTACAATTAATGGAACTCTTAACGTTAATGGAACTTTACGCAGAAATGGTCAGGATGTTGTAACCCGTAACGAACTAAAAGATAGTGTGCCAATCGGAACTATTATTATGTGGGGCGGTCAAACTGGTAATATTCCTTCTGGTTGGGAAATTTGTGACGGCGGTAATGTCGGTGATGCTGGTTTCCGAAATGTCGTTGGTAGTAAATGGGGCGCAACTGGTAATAAGCCAGATTTTCGTGGATTGTTTCCCCGTGGTTCCAACAGCTCTAACGATGGTGCTATGAAGGAATGGGAAACAAACATTAATATAAGAAACGCCAAGGGAAATGATTCCAAACAAAAACCTAAATTGGGCCAAGGTGTTGGTTCATATGGTCACGGTACAGTACAGGCACAACAACTCCGTTTCCACAAGCACGCCGGTGGTTTTGGTGAACATGATAATTCGGGTGCATTTGGTAACACAGTTCGTTCAAACTATGCAGGCACCCGTAAAGGTTTGGACTGGGATAACCGTTCTTATTTTACGAACGAAGGTTATGAAATCGATGGCGCTGGTAGCCGTGATTCTCGAACTACATTAAACAGCGAAGGTCTGATAGGTAATGAAAGCCGCCCATGGTCCATGTCCATTCTTTTTATTATTAAGGTCAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ff7008f52fe7ec34d6622837a9ee75d5bf5125b0f49949a64dbf89a4aa2402e8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6702
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
VR bacteriophages - a small but diverse group of low-temperature viruses Kaliniene,L., Meskys,R., Simoliunas,E., Zajanckauskaite,A. and Truncaite,L. 2015-03-10 — GenBank